DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hrm and LOC100491288

DIOPT Version :9

Sequence 1:NP_001286141.1 Gene:hrm / 35499 FlyBaseID:FBgn0033028 Length:658 Species:Drosophila melanogaster
Sequence 2:XP_031757084.1 Gene:LOC100491288 / 100491288 -ID:- Length:497 Species:Xenopus tropicalis


Alignment Length:616 Identity:144/616 - (23%)
Similarity:242/616 - (39%) Gaps:167/616 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 DKEYDLVPPDGGWGWLVLLGSCLTNILIPGTIKSFGVLFSEFTDAFNSSPTKAAWIPALCYFLYS 106
            |......||||||||:|:||:.::........|:..|.|.|..:.|.:|.::.|||.::......
 Frog     6 DNAMGYTPPDGGWGWMVVLGAFISMGFSYAFSKAITVFFKEIQEHFGASYSEIAWISSILLAAMY 70

  Fly   107 SLGPVSSILSVKYSYRTVTLLGGASASLGMILSFWASSIEFLYISYGVLVGIGAGLSFPPTVYIV 171
            :.|||||||..:|..|.|.:.||..:.:|||::.::|||..|||..||:.|.|..|:..|:|.:|
 Frog    71 AGGPVSSILVNRYGSRPVVIFGGLLSGVGMIIATFSSSILQLYIFIGVIAGFGFSLNLQPSVIVV 135

  Fly   172 TSYFAKLRGLANGLCISGSALGSIILPPLLRWLLETYGYHGSCLIMGGITLNVFVAALFYEPVEQ 236
            ..||.|.|.:||||.::||.:....|.||.::|.:.:|:.||..|:|.:.||..||...:.|:  
 Frog   136 GKYFLKKRPIANGLAMAGSPVVLSTLAPLNQFLFDKFGWRGSFFILGALLLNCCVAGALFRPI-- 198

  Fly   237 HMVRVPRARQALENIPEEEDIGIVMKFENVDEPVPKNEPADKPLLPYNSPPSPLYLPGDERLQFV 301
                                           .|...::...||                      
 Frog   199 -------------------------------GPSTTDKIQKKP---------------------- 210

  Fly   302 RSASAAVVQSYSKSGDEFQSRSRKISTPVRLPQRNQTFTPGQLNSQSSLYAVPEGRSSSNKLTLR 366
                   .|..::.|                  .|:|..                  ::|||...
 Frog   211 -------AQDLAEKG------------------TNETLL------------------TANKLPPS 232

  Fly   367 NSSKSRLSKRSPSTSSFLYVSTPYHGSTLSFQPKEFSSHLSLRSMGSSGTGHAGDSTGQDGSYAD 431
            ..:|...:|:......|                                                
 Frog   233 YGTKMEETKQETCLQKF------------------------------------------------ 249

  Fly   432 VDARGQAQQPQRSKFFDLSLLKDPMYLVILISNSTNAISYTNFIILLPSFGEARGFNKSLSAYLL 496
                        :|..||:|.|...:::.|:.|.....::...|:.|..:.:..|.::..:|:||
 Frog   250 ------------NKVLDLTLFKHRGFMIYLVGNVVMFFAFYAPIVFLTPYAKHLGVDEYSAAFLL 302

  Fly   497 SVVSATDLIGRIGGSALSDMGYI-PKTWYFVG-GLSISGLSLALLPFAWTYSSVCFWCALFGLAS 559
            |:::..|:..|.|...:::..:: ||..||.. .::.:|....:.|||..|..:..:...||||.
 Frog   303 SILAIVDMFARPGTGLIANTKWVRPKIQYFFSFSVTFNGFCHLMCPFATGYVGLVVYSVFFGLAF 367

  Fly   560 GIYVGITAVIMADMLGTERLTSSYGISLFVNGLLQLVGPPLCNYWFEAVNDYNPLFHALG-LTLL 623
            |:...:....:.|::|.:|.:|:.|:...|..:..|:|||:.....:|..||..::...| :.:|
 Frog   368 GMVCALLFETLMDLVGVKRFSSAVGLVTIVECVPLLLGPPIGGAIVDAFGDYKYMYFECGAIMVL 432

  Fly   624 AGASLWSFMPWINRRKANAEEQLDAQIEKAA 654
            ||..|: .|.:.|.|....||:     ||.|
 Frog   433 AGLFLF-VMNYYNYRMLEKEEK-----EKQA 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrmNP_001286141.1 2A0113 49..653 CDD:273325 141/606 (23%)
MFS 59..>234 CDD:119392 63/174 (36%)
MFS <449..633 CDD:119392 47/186 (25%)
LOC100491288XP_031757084.1 2A0113 10..448 CDD:273325 138/596 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H77179
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X70
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

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