DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TpnC4 and AT1G62820

DIOPT Version :10

Sequence 1:NP_610173.2 Gene:TpnC4 / 35498 FlyBaseID:FBgn0033027 Length:153 Species:Drosophila melanogaster
Sequence 2:NP_176470.1 Gene:AT1G62820 / 842581 AraportID:AT1G62820 Length:148 Species:Arabidopsis thaliana


Alignment Length:151 Identity:44/151 - (29%)
Similarity:80/151 - (52%) Gaps:6/151 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADGEYDKEQLRILRNAFKAFDHDGAGSIEHADVSSILEILGQKLEPPAVKALIKEVDKGTTGKL 65
            |:......:|:..::.||..||.||.|.|..:::..::..||.......:|::|  ..:..:...
plant     1 MSKDGLSNDQVSSMKEAFMLFDTDGDGKIAPSELGILMRSLGGNPTESQLKSII--TTENLSSPF 63

  Fly    66 DFSQFCKLAARFIEVEEDVGALQNELKEAFRVYDKEGKGYLTVATLRGILHELDDKLSNQDLDMI 130
            ||::|..|.|:.::.|    ....:|::||:|.||||.|::.||.||.||..:.:||...:.|..
plant    64 DFNRFLDLMAKHLKTE----PFDRQLRDAFKVLDKEGTGFVAVADLRHILTSIGEKLQPSEFDEW 124

  Fly   131 IEEIDADGSGTVDFDEFMQVM 151
            |:|:|....|.:.:::|:..|
plant   125 IKEVDVGSDGKIRYEDFIARM 145

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TpnC4NP_610173.2 PTZ00184 1..152 CDD:185504 44/151 (29%)
AT1G62820NP_176470.1 PTZ00184 4..148 CDD:185504 43/148 (29%)

Return to query results.
Submit another query.