DRSC/TRiP Functional Genomics Resources

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Protein Alignment TpnC4 and myl6

DIOPT Version :9

Sequence 1:NP_001163055.1 Gene:TpnC4 / 35498 FlyBaseID:FBgn0033027 Length:153 Species:Drosophila melanogaster
Sequence 2:XP_005166134.1 Gene:myl6 / 798632 ZFINID:ZDB-GENE-041010-28 Length:164 Species:Danio rerio


Alignment Length:143 Identity:38/143 - (26%)
Similarity:75/143 - (52%) Gaps:5/143 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EYDKEQLRILRNAFKAFDHDGAGSIEHADVSSILEILGQK-LEPPAVKALIKEVDKGTTGK-LDF 67
            ::.::|:...:.||..||..|.|.|.:.....::..|||. :....:|.|....::....| |||
Zfish     3 DFTEDQICEFKEAFLLFDRTGDGKIMYNQCGDVMRALGQNPVNAEVLKVLGNPSNEDMNMKMLDF 67

  Fly    68 SQFCKLAARFIEVEEDVGALQNELKEAFRVYDKEGKGYLTVATLRGILHELDDKLSNQDLDMIIE 132
            .||..: .:.|...:|.|:.: :..|..||:||||.|.:..|.||.:|..|.:|::.::::.::.
Zfish    68 EQFLPM-LQAIAKNKDQGSFE-DFVEGLRVFDKEGNGTVMGAELRHVLTTLGEKMTEEEVETLLA 130

  Fly   133 EIDADGSGTVDFD 145
            ..: |.:|.::::
Zfish   131 GHE-DANGCINYE 142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TpnC4NP_001163055.1 PTZ00184 1..152 CDD:185504 38/143 (27%)
EFh 14..75 CDD:238008 18/62 (29%)
EFh 90..152 CDD:238008 16/56 (29%)
myl6XP_005166134.1 EFh 11..94 CDD:298682 22/84 (26%)
EF-hand_6 11..40 CDD:290141 7/28 (25%)
EFh 88..142 CDD:238008 16/54 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1470794at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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