DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TpnC4 and Efcab3

DIOPT Version :9

Sequence 1:NP_001163055.1 Gene:TpnC4 / 35498 FlyBaseID:FBgn0033027 Length:153 Species:Drosophila melanogaster
Sequence 2:XP_017170251.1 Gene:Efcab3 / 70894 MGIID:1918144 Length:1435 Species:Mus musculus


Alignment Length:193 Identity:43/193 - (22%)
Similarity:83/193 - (43%) Gaps:52/193 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DKEQLRILRNAFKAFDHDGAGSI-EHADVSSILEILGQKLEPPAVKALIK----EVDKGTTGKL- 65
            :||:|::|::...:.|    |.| :...::|:.:|.|:|::...:..::|    |::|.....| 
Mouse   736 EKEELKLLKSLPVSKD----GKIYKKRLLNSVAQIKGKKVQVSNIPLILKNAEFELEKEDCEDLM 796

  Fly    66 -----------DFSQFCKLAARFIEVEEDVGALQN---------------ELKEAFRVYDKEGKG 104
                       :.|.....|..|...:.|||.|.|               ||:.|..|| ..||.
Mouse   797 QLLHTDENKMVELSVLLDKAKNFTGEKIDVGNLNNVLRKMGLMLSDNVYKELQHALSVY-TGGKI 860

  Fly   105 YLT-----VATLRG----------ILHELDDKLSNQDLDMIIEEIDADGSGTVDFDEFMQVMT 152
            |.|     |..|:|          :|..:..|:..::.:.:|.::..:|:.|||.:|.:.:::
Mouse   861 YKTRLLKCVKDLKGPRIKVKKVESLLENMGIKVKGEEFEELIAQLPPEGNKTVDLNELLDIVS 923

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TpnC4NP_001163055.1 PTZ00184 1..152 CDD:185504 43/191 (23%)
EFh 14..75 CDD:238008 13/77 (17%)
EFh 90..152 CDD:238008 20/76 (26%)
Efcab3XP_017170251.1 PTZ00183 <1006..1119 CDD:185503
EF-hand_8 1065..1115 CDD:372744
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167833853
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.