DRSC/TRiP Functional Genomics Resources

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Protein Alignment TpnC4 and Myl4

DIOPT Version :9

Sequence 1:NP_001163055.1 Gene:TpnC4 / 35498 FlyBaseID:FBgn0033027 Length:153 Species:Drosophila melanogaster
Sequence 2:NP_001102965.1 Gene:Myl4 / 688228 RGDID:1591197 Length:193 Species:Rattus norvegicus


Alignment Length:154 Identity:40/154 - (25%)
Similarity:74/154 - (48%) Gaps:8/154 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EYDKEQLRILRNAFKAFDHDGAG--SIEHADVSSILEILGQK-LEPPAVKALIKEVDKGTTGK-L 65
            ::..:|:...:.||..||....|  .|.:.....:|..|||. .....::.|.|...:....| |
  Rat    43 DFSADQIEEFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNSKTL 107

  Fly    66 DFSQFCKLAARFIEVEEDVGALQNELKEAFRVYDKEGKGYLTVATLRGILHELDDKLSNQDLDMI 130
            ||..|..: .:.|...::.|..: :..|..||:|||..|.:..|.||.:|..|.:|:|..:::.:
  Rat   108 DFEMFLPI-LQHISRNKEQGTYE-DFVEGLRVFDKESNGTVMGAELRHVLATLGEKMSEAEVEQL 170

  Fly   131 IEEIDADGSGTVDFDEFMQ-VMTG 153
            :.. ..|.:|.::::.|:: ||:|
  Rat   171 LTG-QEDANGCINYEAFVKHVMSG 193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TpnC4NP_001163055.1 PTZ00184 1..152 CDD:185504 38/151 (25%)
EFh 14..75 CDD:238008 17/64 (27%)
EFh 90..152 CDD:238008 18/62 (29%)
Myl4NP_001102965.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..36
PTZ00184 45..192 CDD:185504 38/149 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1470794at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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