DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TpnC4 and cabp2a

DIOPT Version :10

Sequence 1:NP_610173.2 Gene:TpnC4 / 35498 FlyBaseID:FBgn0033027 Length:153 Species:Drosophila melanogaster
Sequence 2:NP_001025439.2 Gene:cabp2a / 572226 ZFINID:ZDB-GENE-050913-25 Length:236 Species:Danio rerio


Alignment Length:153 Identity:46/153 - (30%)
Similarity:84/153 - (54%) Gaps:8/153 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DGEYDKEQLRILRNAFKAFDHDGAGSIEHADVSSILEILGQKLEPPAVKALIKEVDKGTTGKLDF 67
            |.:...|::..|:.||:.||.|..|.|...|:...:..:|..   |....||:...:...|::||
Zfish    88 DRDLRPEEIEELKEAFREFDKDKDGFISCKDLGECMRTMGYM---PTEMELIELSQQICGGRVDF 149

  Fly    68 SQFCKLAA--RFIEVEEDVGALQNELKEAFRVYDKEGKGYLTVATLRGILHEL-DDKLSNQDLDM 129
            ..|..|..  ...|..:.:|.  .||::|||.:|..|.|.:::|.||..:.:| .::|:::::|.
Zfish   150 EDFVDLMGPKMLAETADMIGV--KELRDAFREFDSNGDGQISLAELREAMKKLMGEQLNHREIDE 212

  Fly   130 IIEEIDADGSGTVDFDEFMQVMT 152
            |:.::|.:|.|.|||:||:::|:
Zfish   213 ILRDVDLNGDGLVDFEEFVRMMS 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TpnC4NP_610173.2 PTZ00184 1..152 CDD:185504 45/151 (30%)
cabp2aNP_001025439.2 PTZ00184 91..234 CDD:185504 44/147 (30%)

Return to query results.
Submit another query.