DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TpnC4 and calml4a

DIOPT Version :9

Sequence 1:NP_001163055.1 Gene:TpnC4 / 35498 FlyBaseID:FBgn0033027 Length:153 Species:Drosophila melanogaster
Sequence 2:NP_001124246.1 Gene:calml4a / 560151 ZFINID:ZDB-GENE-081022-9 Length:153 Species:Danio rerio


Alignment Length:150 Identity:43/150 - (28%)
Similarity:78/150 - (52%) Gaps:14/150 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KEQLRILRNAFKAFDHDGAGSIEHADVSSILEILGQKLEPPAVKAL-----IKEVDKGTTGKLDF 67
            :.|:...:..|..:|....|.||..|:.:::..||..   |....:     :.::||  ||:|||
Zfish     7 QNQIDEFKECFSLYDKKRKGKIEAKDLITVMRCLGTS---PTYNEVDRHLQVHKIDK--TGELDF 66

  Fly    68 SQFCKLAARFIEVEEDVGALQNELKEAFRVYDKEGKGYLTVATLRGILHELDDKLSNQDLDMIIE 132
            |.|..:..|.::.|:.    :.|:.||.|:.||..|||:..:.||..|..|.:||:::::|.:.:
Zfish    67 STFLTMMHRQMQQEDP----KTEILEAMRMTDKHKKGYIQASELRAKLTGLGEKLTDKEVDELFK 127

  Fly   133 EIDADGSGTVDFDEFMQVMT 152
            |......|.|.::||.:::|
Zfish   128 EAHVGRDGLVHYEEFTRMVT 147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TpnC4NP_001163055.1 PTZ00184 1..152 CDD:185504 42/148 (28%)
EFh 14..75 CDD:238008 18/65 (28%)
EFh 90..152 CDD:238008 21/61 (34%)
calml4aNP_001124246.1 PTZ00184 1..147 CDD:185504 42/148 (28%)
EFh 12..74 CDD:238008 18/66 (27%)
EFh 85..147 CDD:238008 21/61 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23050
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.