DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TpnC4 and Caln1

DIOPT Version :10

Sequence 1:NP_610173.2 Gene:TpnC4 / 35498 FlyBaseID:FBgn0033027 Length:153 Species:Drosophila melanogaster
Sequence 2:XP_017453894.1 Gene:Caln1 / 363909 RGDID:1305843 Length:293 Species:Rattus norvegicus


Alignment Length:74 Identity:29/74 - (39%)
Similarity:45/74 - (60%) Gaps:5/74 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 IEVEEDVGALQNELKEAFRVYDKEGKGYLTVATLRGILHELDDKLSNQDLDMIIEEIDADGSGTV 142
            |.|||     .:|::|||||.|::|.|:::...|...:..|....|..:|.:|::.:|.||.|.|
  Rat   107 ISVEE-----LDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 166

  Fly   143 DFDEFMQVM 151
            ||||||.::
  Rat   167 DFDEFMTIL 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TpnC4NP_610173.2 PTZ00184 1..152 CDD:185504 29/74 (39%)
Caln1XP_017453894.1 PTZ00184 106..>216 CDD:185504 29/74 (39%)

Return to query results.
Submit another query.