DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TpnC4 and Myl6l2

DIOPT Version :10

Sequence 1:NP_610173.2 Gene:TpnC4 / 35498 FlyBaseID:FBgn0033027 Length:153 Species:Drosophila melanogaster
Sequence 2:XP_006249352.1 Gene:Myl6l2 / 304447 RGDID:1559821 Length:151 Species:Rattus norvegicus


Alignment Length:152 Identity:34/152 - (22%)
Similarity:77/152 - (50%) Gaps:11/152 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EYDKEQLRILRNAFKAFDHDGAGSIEHADVSSILEILGQKLEPPAVKALIK-----EVDKGTTGK 64
            ::.::|....:.||:.||..|.|.|.::....::..|||.   |....::|     :.|:.....
  Rat     3 DFTEDQTTEFKEAFQLFDRTGNGKILYSQCGDVMRALGQN---PTNTEVLKVLGNPKSDEMNVEV 64

  Fly    65 LDFSQFCKLAARFIEVEEDVGALQNELKEAFRVYDKEGKGYLTVATLRGILHELDDKLSNQDLDM 129
            |||..|..: .:.:...:|.|..::.: |...|:||||...:..|.:|.||..|.:.::.::::|
  Rat    65 LDFEHFLPM-LQTVAKSKDQGTYEDYV-EGLHVFDKEGNSAVLGAEIRHILVTLGENMTEEEVEM 127

  Fly   130 IIEEIDADGSGTVDFDEFMQVM 151
            ::...: |.:..::::|.::::
  Rat   128 LVAGHE-DSNSCINYEELVRMV 148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TpnC4NP_610173.2 PTZ00184 1..152 CDD:185504 34/152 (22%)
Myl6l2XP_006249352.1 PTZ00184 5..149 CDD:185504 34/150 (23%)

Return to query results.
Submit another query.