DRSC/TRiP Functional Genomics Resources

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Protein Alignment TpnC4 and Efcab3

DIOPT Version :10

Sequence 1:NP_610173.2 Gene:TpnC4 / 35498 FlyBaseID:FBgn0033027 Length:153 Species:Drosophila melanogaster
Sequence 2:XP_038942051.1 Gene:Efcab3 / 303589 RGDID:1305423 Length:6926 Species:Rattus norvegicus


Alignment Length:195 Identity:41/195 - (21%)
Similarity:81/195 - (41%) Gaps:46/195 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EYDKEQLRILRN--AFKAFDH------------DGAGSIEHADVSSILEILGQKLEPPAVKALIK 55
            |...|.||.|::  .|.|.||            ...|.::..:|.|:||.:|.||.|...|::::
  Rat  3312 EITDEGLRKLQDMLPFDASDHVFQNRMLDAVLSTNEGEVKLGNVDSVLENMGVKLTPKEQKSIMR 3376

  Fly    56 EV---DKGTTGKLDFSQFCKLAARF------------------IEV-EEDVGALQNEL--KEAFR 96
            .:   ::...||:..||..:...:.                  ||: |.:...|::.|  ....:
  Rat  3377 TLLVEEESVDGKIPLSQLMRAVTKVTGGQVNIKDIKSTLEKMGIELTENECSQLESVLPINAKGK 3441

  Fly    97 VYDK--------EGKGYLTVATLRGILHELDDKLSNQDLDMIIEEIDADGSGTVDFDEFMQVMTG 153
            ||.|        ...|.:.||.:..:|..::.|.::.:::.::|::..|.|..|:....::.:.|
  Rat  3442 VYKKRLLETVVASKSGVVDVANIDTVLQNMEMKFTDTEMEELLEKLPVDDSQKVELRNLIETIEG 3506

  Fly   154  153
              Rat  3507  3506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TpnC4NP_610173.2 PTZ00184 1..152 CDD:185504 40/192 (21%)
Efcab3XP_038942051.1 PTZ00184 155..286 CDD:185504
FRQ1 2265..2360 CDD:444056
EF-hand_8 6556..6606 CDD:404678
Blue background indicates that the domain is not in the aligned region.

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