DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TpnC4 and Tnnc1

DIOPT Version :9

Sequence 1:NP_001163055.1 Gene:TpnC4 / 35498 FlyBaseID:FBgn0033027 Length:153 Species:Drosophila melanogaster
Sequence 2:NP_001029277.1 Gene:Tnnc1 / 290561 RGDID:1309921 Length:161 Species:Rattus norvegicus


Alignment Length:146 Identity:42/146 - (28%)
Similarity:82/146 - (56%) Gaps:10/146 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 RNAFK-AFD------HDGAGSIEHADVSSILEILGQKLEPPAVKALIKEVDKGTTGKLDFSQFCK 72
            :|.|| |||      .||.  |...::..::.:|||...|..::.:|.|||:..:|.:||.:|..
  Rat    17 KNEFKAAFDIFVLGAEDGC--ISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLV 79

  Fly    73 LAARFIEVEEDVGALQNELKEAFRVYDKEGKGYLTVATLRGILHELDDKLSNQDLDMIIEEIDAD 137
            :..|.:: ::..|..:.||.:.||::||...||:.:..|:.:|....:.::..|::.::::.|.:
  Rat    80 MMVRCMK-DDSKGKSEEELSDLFRMFDKNADGYIDLDELKMMLQATGETITEDDIEELMKDGDKN 143

  Fly   138 GSGTVDFDEFMQVMTG 153
            ..|.:|:|||::.|.|
  Rat   144 NDGRIDYDEFLEFMKG 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TpnC4NP_001163055.1 PTZ00184 1..152 CDD:185504 40/143 (28%)
EFh 14..75 CDD:238008 21/66 (32%)
EFh 90..152 CDD:238008 17/61 (28%)
Tnnc1NP_001029277.1 PTZ00184 9..157 CDD:185504 40/142 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.