DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30440 and Itsn1

DIOPT Version :10

Sequence 1:NP_610172.1 Gene:CG30440 / 35496 FlyBaseID:FBgn0050440 Length:1057 Species:Drosophila melanogaster
Sequence 2:XP_038944174.1 Gene:Itsn1 / 29491 RGDID:2935 Length:1718 Species:Rattus norvegicus


Alignment Length:488 Identity:107/488 - (21%)
Similarity:185/488 - (37%) Gaps:151/488 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   615 QRHRRGHILKELFETEKIYVNEIASILKGYYDRLKSDESAPASLQGKANVLFGNLNEIYSFHNDV 679
            :|.|:|:| .||..||:.|||::..:                                    .::
  Rat  1232 ERKRQGYI-HELIVTEENYVNDLQLV------------------------------------TEI 1259

  Fly   680 FLKDLENCISVTER-VALCFVKRRD------------------------------------KFYQ 707
            |.|.|.....:||: ||:.||..::                                    ...|
  Rat  1260 FQKPLTESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPHMQ 1324

  Fly   708 LYSFYCQNIQRSEKLRETLVDTHMFFKE----------CQIGLGHKLPLGAYLLKPVQRITKYQL 762
            .|..:|........|.:...|....|||          |:     .:||.:::|||:||:|:|.|
  Rat  1325 PYIRFCSCQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCK-----GMPLSSFILKPMQRVTRYPL 1384

  Fly   763 LLKDLLLFT-DNDSCRNELKNALDCMLIVLKCVNDSMHQ-------------ISITGFSGDLAKQ 813
            ::|::|..| :|....:.||:||:....:...||:.:.:             :...|.|      
  Rat  1385 IIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLS------ 1443

  Fly   814 GELLMQDSF------QVWIESKKDIRLRMKPKRRHIFLYQKSLLLCKQTSKSGYN--------KS 864
             |.|:.:|.      :.::.|.|..:.:.. |..:.||:...|||.:.|...|.:        ||
  Rat  1444 -EQLVFNSVTNCLGPRKFLHSGKLYKAKSN-KELYGFLFNDFLLLTQITKPLGSSSTDKVFSPKS 1506

  Fly   865 SYQ---FKSDVKMSQ--IGLTESVSGDAKRFEVWLKGRQEVYTLQASTIGVKEMWVAEIKRV--L 922
            :.|   :|:.:.:::  :.|....|||...|.:  .....||||:|.:|..:..||.:||..  |
  Rat  1507 NLQYKMYKTPIFLNEVLVKLPTDPSGDEPIFHI--SHIDRVYTLRAESINERTAWVQKIKAASEL 1569

  Fly   923 FNQLEKLKGDQIARYNIRHQSLWQKSSCEAPNITHCSLRRTECFELPLNDSNRNTNIRSEKTCLS 987
            :.:.||.|.::  .|.:|.|        .|..|....:...|..||....|:..:|...|.|..|
  Rat  1570 YIETEKKKREK--AYLVRSQ--------RATGIGRLMVNVVEGIELKPCRSHGKSNPYCEVTMGS 1624

  Fly   988 DQNIVNGPSVQDQHEKNSWSSDCS----DIDED 1016
            ..:|..  ::||.... .|:|:|.    |::::
  Rat  1625 QCHITK--TIQDTLNP-KWNSNCQFFIRDLEQE 1654

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30440NP_610172.1 RhoGEF 622..796 CDD:214619 45/221 (20%)
PH-like 802..925 CDD:473070 35/143 (24%)
Itsn1XP_038944174.1 EH 14..106 CDD:197477
Atrophin-1 <85..>194 CDD:460830
EH 217..309 CDD:197477
Smc <362..>655 CDD:440809
MAP7 605..714 CDD:461709
SH3 741..800 CDD:473055
INTAP 800..914 CDD:435467
SH3_Intersectin1_2 914..965 CDD:212922
SH3 1003..1054 CDD:473055
SH3_Intersectin1_4 1071..1135 CDD:212926
SH3_Intersectin1_5 1155..1208 CDD:212928
RhoGEF 1235..1418 CDD:238091 46/224 (21%)
PH_13 1437..1579 CDD:465218 38/151 (25%)
C2_Intersectin 1579..1713 CDD:176021 20/89 (22%)
Blue background indicates that the domain is not in the aligned region.

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