DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG30440 and Vav1

DIOPT Version :9

Sequence 1:NP_610172.1 Gene:CG30440 / 35496 FlyBaseID:FBgn0050440 Length:1057 Species:Drosophila melanogaster
Sequence 2:NP_035821.3 Gene:Vav1 / 22324 MGIID:98923 Length:845 Species:Mus musculus


Alignment Length:600 Identity:128/600 - (21%)
Similarity:234/600 - (39%) Gaps:155/600 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   480 ECNEY--QCIATPPN-----ELSKDC--LNAVEEGV-FC-----------NTEYDDFHENLTSSC 523
            :|..:  ||...||:     |.::.|  ..|:.:|| .|           |....:....::...
Mouse     6 QCTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPQAINLREVNLRPQMSQFL 70

  Fly   524 CCS------GSFCDDDGC--SYLDEGLSV-DIK--SKNVQSLHESGTDEKLSRKTILLARTEDT- 576
            |..      .:.|:..|.  |.|.|...: |::  .|.:.:|...........|.|:...|||: 
Mouse    71 CLKNIRTFLSTCCEKFGLKRSELFEAFDLFDVQDFGKVIYTLSALSWTPIAQNKGIMPFPTEDSA 135

  Fly   577 ---NDVTQGISDGTTYFTGSLNIT-------------HLPKSNEIFKK-------PQDPEMQRH- 617
               .|:..|:||       .::.|             ...:.:||::.       |..|:|..: 
Mouse   136 LNDEDIYSGLSD-------QIDDTAEEDEDLYDCVENEEAEGDEIYEDLMRLESVPTPPKMTEYD 193

  Fly   618 RRGHILKELFETEKIYVNEIASILKGYYDRLKSDESAPASLQGKANVLFGNLNEIYSFHNDVFLK 682
            :|...|:|:.:||:.|.:.:.||.:.:...|:. ...|..::    .:|.|:.|::|.|.. |||
Mouse   194 KRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR-FLKPQDME----TIFVNIEELFSVHTH-FLK 252

  Fly   683 DLENCISVTERVAL--CFVKRRDKFYQLYSFYCQNIQRSEKLRETLV----DTHMFFKEC-QIGL 740
            :|::.::......|  .|:|.:::|. :|..||..::.:.|..:.:.    |..|..:|| |...
Mouse   253 ELKDALAGPGATTLYQVFIKYKERFL-VYGRYCSQVESASKHLDQVATAREDVQMKLEECSQRAN 316

  Fly   741 GHKLPLGAYLLKPVQRITKYQLLLKDLLLFTDNDSCRNELKNALDCMLIVLKCVND--------- 796
            ..:..|...|:.|:||:.||.|||::|:..|.:.:.:..|:.|||.|..:.:|||:         
Mouse   317 NGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQDATEKENLRLALDAMRDLAQCVNEVKRDNETLR 381

  Fly   797 --SMHQISITGFSGDLAKQGELLMQDSFQVW-IE--SKKDIRLRMKPKRRHIFLYQKSLLLCKQT 856
              :..|:||......||..|...:....::. :|  ||.|         |:.||..|:||:||:.
Mouse   382 QITNFQLSIENLDQSLANYGRPKIDGELKITSVERRSKTD---------RYAFLLDKALLICKRR 437

  Fly   857 SKSGYNKSSYQFKSDVKMSQIGLTESVSGD-----------------AKRFEVWLKGRQEVYTLQ 904
            .      .||..|:.|.:....:.:..||:                 |:.:|::.|.|:      
Mouse   438 G------DSYDLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTRE------ 490

  Fly   905 ASTIGVKEMWVAEIKRVL-------------------FNQLEKLKGDQIARYNIRHQSLWQKSSC 950
                 :|:.|:.:.:..:                   |.:....|..|:......:|. ::...|
Mouse   491 -----LKKKWMEQFEMAISNIYPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQG-YRCYRC 549

  Fly   951 EAPNITHCSLRRTEC 965
            .||....|..|...|
Mouse   550 RAPAHKECLGRVPPC 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30440NP_610172.1 RhoGEF 622..796 CDD:214619 50/180 (28%)
PH-like 802..925 CDD:302622 30/161 (19%)
PH 829..922 CDD:278594 22/109 (20%)
Vav1NP_035821.3 CH 18..102 CDD:320720 15/83 (18%)
RhoGEF 195..371 CDD:238091 50/182 (27%)
PH_Vav 385..508 CDD:269930 30/148 (20%)
C1_1 516..567 CDD:278556 9/49 (18%)
SH3_VAV1_1 596..658 CDD:212912
SH2_Vav1 665..767 CDD:198268
SH3_VAV1_2 786..839 CDD:212909
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.