DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stw and cp

DIOPT Version :9

Sequence 1:NP_001137606.1 Gene:stw / 35494 FlyBaseID:FBgn0286203 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_571877.1 Gene:cp / 84702 ZFINID:ZDB-GENE-010522-1 Length:1087 Species:Danio rerio


Alignment Length:693 Identity:140/693 - (20%)
Similarity:226/693 - (32%) Gaps:222/693 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   245 GPSIQVCENDKVVIDVENHMEGMEVTIHWHGI----WQRGSQYYDGVPFVTQ--CPIQQGNTFRY 303
            ||.|...|:|.|::.::| |.....::|.||:    ...|:.|.|....|.:  ..:..|.||.|
Zfish    97 GPLISAEEDDTVIVHLKN-MARRAYSLHAHGLSYNKTNEGALYPDSSEKVEKHDDSVAPGTTFTY 160

  Fly   304 QWT-----------GNAGTHFWHAHTGLQK--LDGLYGSVVVRQPPSRDPNSHLYDFDLTTHIML 355
            .||           .|..|..:|:|....|  ..||.|.::|.:..|.|.:.......|.|.:..
Zfish   161 IWTLPASHAPGKDDTNCLTRIYHSHVNAPKDIASGLIGPLIVCKKGSLDVHGDKTGDYLYTLMFT 225

  Fly   356 ISD----WLHEDAAERY---PGRLAVNTGQDPESMLINGKGQFRDPN-----TGFMTNTPLEIFT 408
            :||    |..::..:.|   |.::    .:|.|:        |::.|     .|::... |...:
Zfish   226 VSDENLSWYLDENIKTYCSAPAKV----NKDDEA--------FQESNKMHSINGYVYGN-LPDLS 277

  Fly   409 ITPGRR---YRFRMINAFASVCPAQVTIEG---HGMTVIATDGEPVHPVDVNTIISFSGERYDFV 467
            :..|.:   :.|.|.|        :|.|..   ||.  |.||...    .|:|:..|.....:..
Zfish   278 MCMGNKIHWHLFGMGN--------EVDIHSAFFHGQ--ILTDKRQ----HVDTVSLFPATFVNVE 328

  Fly   468 ISADQPVGAYWI---QLRGLGECG-------------IRRAQQLAILRYARGPYQPASSPPTYDV 516
            :.||.|  ..|:   |:....|.|             :.:.:....:|    .|..|:....:|.
Zfish   329 MVADNP--GQWLLSCQVNDHLEAGMQAFFEIKKCFPNVHKPRPFGEVR----QYYIAAEEIIWDY 387

  Fly   517 G---IPQGVILNPLDAIC---------DR-----KRADAVCVSNLKNAKKVDK-------GVL-- 555
            |   |.|..:...:|.|.         ||     |:...|..::....|:.:|       |:|  
Zfish   388 GPTEINQYTMKKLVDDIVSDTFFDNRNDRIGGKYKKVQYVEYTDDTFTKRKEKTPEEQHLGILGP 452

  Fly   556 ---VERPDVKIFLPFRFFVYEPKALFIPNTYNRFLVVPSGDHLTSLVD--------EISYISPPA 609
               .|..|. |.:.||.....|           |.:.|.|......:|        |.||.....
Zfish   453 VIRAEEEDT-IKVTFRNKASRP-----------FSIQPHGVQYNIDMDGTLYHNVLEESYTDKKL 505

  Fly   610 PPLSQ----IDDIPP-----------EYFCNGDNRPPNCGPNCECTHMV--------DIPLGAIV 651
            ..|.:    |:.:|.           |:....|..|....|:| .|::.        |...|.:.
Zfish   506 RELKKQPRVIEPLPAAMVRPDTTYKYEWVVPKDGGPTEKDPDC-LTYLYYSAVDPIRDTNSGLVG 569

  Fly   652 EVVL-----VDEVQQVNLSHPFHLHGTAF----------YVVGLGRSP------DKSIKKINLKH 695
            .:::     :...:|.|:...|||..|.|          .:....:.|      |...::.|..|
Zfish   570 PLLICKPKTLKSGKQKNVDKEFHLLATVFDENLSWYLDDNINRYAKQPKSVNKEDADFQESNKMH 634

  Fly   696 AL----------------------------ELDQMGML---ERHFSKPPLKDTIAV-PNNGYVVI 728
            :|                            |.|..|:.   .|...|...:|||.| |:..:.||
Zfish   635 SLNGYMYGNLKGLNMCKGDKVSWHLSGLGSETDIHGLYFEGNRFLYKETRRDTINVFPHISHTVI 699

  Fly   729 RFRADNPGYWLFHCHFLFHIVIGMNLIFHIGTTADLPPVPPRF 771
             ...|:.|.:..:|....|        :|.|..|:......||
Zfish   700 -MEPDSMGQFEVNCKTTDH--------YHGGMRANYTVEKCRF 733

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stwNP_001137606.1 ascorbase 230..756 CDD:274555 135/676 (20%)
CuRO_1_tcLCC2_insect_like 230..333 CDD:259927 29/106 (27%)
CuRO_2_tcLCC_insect_like 352..500 CDD:259951 32/181 (18%)
CuRO_3_tcLLC2_insect_like 599..767 CDD:259972 46/251 (18%)
cpNP_571877.1 CuRO_1_ceruloplasmin 23..205 CDD:259884 30/108 (28%)
CuRO_2_ceruloplasmin 217..357 CDD:259907 34/168 (20%)
Cupredoxin 371..585 CDD:302766 41/230 (18%)
CuRO_4_ceruloplasmin 588..731 CDD:259908 29/151 (19%)
CuRO_5_ceruloplasmin 745..915 CDD:259887
CuRO_6_ceruloplasmin 927..1071 CDD:259898
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454773at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R446
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
44.040

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