DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stw and sks5

DIOPT Version :9

Sequence 1:NP_001137606.1 Gene:stw / 35494 FlyBaseID:FBgn0286203 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_177743.1 Gene:sks5 / 843948 AraportID:AT1G76160 Length:541 Species:Arabidopsis thaliana


Alignment Length:581 Identity:137/581 - (23%)
Similarity:217/581 - (37%) Gaps:133/581 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   233 ERGILTANRMIPGPSIQVCENDKVVIDVENHMEGMEVTIHWHGIWQRGSQYYDGVPFVTQCPIQQ 297
            ::||| .|...|||.|....||.::|:|.|.:: ....:.|:||.||.:.:.||| :.|.|||..
plant    46 QQGIL-INGAFPGPDIHSVTNDNLIINVYNSLD-EPFLLSWNGIQQRRNSFVDGV-YGTTCPIPP 107

  Fly   298 GNTFRY--QWTGNAGTHFWHAHTGLQKLDGLYGSV-VVRQP----PSRDPNSHLYDFDLTTHIML 355
            |..:.|  |.....|:.::....|..|..|.:|.: ::.:|    |..||..     |.|   :|
plant   108 GKNYTYILQMKDQIGSFYYFPSLGFHKAAGGFGGIRILSRPRIPVPFPDPAG-----DTT---VL 164

  Fly   356 ISDWL---HEDAAERYPGRLAVNTGQD---PESMLINGKGQFRDPNTGFMTNTPLEIFTITPGRR 414
            |.||.   |.|.      |..::.|:.   |:.:||||:      ::|...|       :..|:.
plant   165 IGDWYKANHTDL------RAQLDNGKKLPLPDGILINGR------SSGATLN-------VEQGKT 210

  Fly   415 YRFRMINAFASVCPAQVTIEGHGMTVIATDGEPVHPVDVNTIISFSGERYDFVISADQPVGAYWI 479
            ||||:.|. .........|:.|.|.|:..:|........:::....|:.|..:::|||....|::
plant   211 YRFRISNV-GLQDSLNFRIQDHKMKVVEVEGTHTLQTTFSSLDVHVGQSYSVLVTADQTPRDYYV 274

  Fly   480 QLRGLGECGIRRAQQLAILRY---ARGPYQPASSPPTYDVGIPQGVILNPLDAICDRKRADAVCV 541
            .:.......:  .....|.||   |.|...|....||..:...    ||...||.....|..   
plant   275 VVSSRFTSNV--LTTTGIFRYSNSAGGVSGPIPGGPTIQIDWS----LNQARAIRTNLSASG--- 330

  Fly   542 SNLKNAKKVDKGVLVERPDVKIFLPFRFFVYEPKALF---IPNTYNRFLVVPSGDHLTS----LV 599
                           .||:             |:..:   :.||.....:..|...:..    .|
plant   331 ---------------PRPN-------------PQGSYHYGMINTTRTIRLASSAGQVDGKQRYAV 367

  Fly   600 DEISYISPPAPPLS-----QIDDIPPEYFCNGDNRPPNCGPNCECTHMVDIPLGAIVEVVL---V 656
            :.:|: .|...||.     :||.:   |........|..|.....|.::.:.....||::.   .
plant   368 NSVSF-KPADTPLKIADYFKIDGV---YRSGSIQYQPTGGGIYLDTSVMQVDYRTFVEIIFENSE 428

  Fly   657 DEVQQVNLSHPFHLHGTAFYVVGL--GR-SPDKSIKKINLKHALELDQMGMLERHFSKPPLKDTI 718
            |.||.      :||.|.:|:|||:  |: ||| |..:.||:.|:                .:.|:
plant   429 DIVQS------WHLDGYSFWVVGMDGGQWSPD-SRNEYNLRDAV----------------ARCTV 470

  Fly   719 AVPNNGYVVIRFRADNPGYWLFHCHFLFHIVIGMNLIFHIGTTA----DLPPVPPRFPTCG 775
            .|..:.:..|....||.|.|.....|.....:|..|...:.|.:    |..|:|.....||
plant   471 QVYPSSWTAILIALDNVGMWNLRSEFWARQYLGQQLYLRVYTPSTSLRDEYPIPKNALLCG 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stwNP_001137606.1 ascorbase 230..756 CDD:274555 131/556 (24%)
CuRO_1_tcLCC2_insect_like 230..333 CDD:259927 33/102 (32%)
CuRO_2_tcLCC_insect_like 352..500 CDD:259951 33/153 (22%)
CuRO_3_tcLLC2_insect_like 599..767 CDD:259972 43/182 (24%)
sks5NP_177743.1 PLN02991 10..541 CDD:215536 137/581 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454773at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.880

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