DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stw and sks12

DIOPT Version :9

Sequence 1:NP_001137606.1 Gene:stw / 35494 FlyBaseID:FBgn0286203 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_175953.1 Gene:sks12 / 842006 AraportID:AT1G55570 Length:555 Species:Arabidopsis thaliana


Alignment Length:575 Identity:135/575 - (23%)
Similarity:222/575 - (38%) Gaps:126/575 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 AACQVCTPNAT-----------NTVWSHCQCVLAD-GVERGILTANRMIPGPSIQVCENDKVVID 259
            |.| :|...||           :.||:......:. ||.:.::..|...|||:|....|:.|:::
plant     9 AVC-LCVATATVMMVQAEDPYFHHVWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNVIVN 72

  Fly   260 VENHMEGMEVTIHWHGIWQRGSQYYDGVPFVTQCPIQQGNTFRY--QWTGNAGTHFWHAHTGLQK 322
            |.|::: ....|.|.||..|.:.:.||.. .|.|||..|..|.|  |.....|::|::..|.:.:
plant    73 VFNNLD-EPFLITWAGIQHRKNCWQDGTA-GTMCPIPPGQNFTYHFQPKDQIGSYFYYPTTAMHR 135

  Fly   323 LDGLYGSVVVRQ-----PPSRDPNSHLYDFDLTTHIMLISDWLHEDAAE--------RYPGRLAV 374
            ..|.:|.:.|..     .|..||..     |.|   :||:||..:...:        |..||   
plant   136 AAGGFGGLRVNSRLLIPVPYADPED-----DYT---ILINDWYTKSHTQLKKFLDSGRTIGR--- 189

  Fly   375 NTGQDPESMLINGKGQFRDPNTGFMTNTPLEIFTITPGRRYRFRMINA--FASVCPAQVTIEGHG 437
                 |:.:|||||       :|....:...:||:.||:.||.|:.|.  .||:   ...|:.|.
plant   190 -----PDGILINGK-------SGKTDGSDKPLFTLKPGKTYRVRICNVGLKASL---NFRIQNHK 239

  Fly   438 MTVIATDGEPVHPVDVNTIISFSGERYDFVISADQPVGAYWI--QLRGLGECGIRRAQQLAILRY 500
            |.::..:|..|...|.:::....|:.:..:::|||....|::  ..|.|.    :......:|||
plant   240 MKLVEMEGSHVLQNDYDSLDVHVGQCFGVIVTADQEPKDYYMIASTRFLK----KPLTTTGLLRY 300

  Fly   501 ARGPYQPASSPPTYDVGIPQGVILNPLDAICDRKRADAVCVSNLKNAKKVDKGVLVERPDVKIFL 565
            ..|....:|..|...||....  ||...:......|.|.                  ||:     
plant   301 EGGKGPASSQLPAAPVGWAWS--LNQYRSFRWNLTASAA------------------RPN----- 340

  Fly   566 PFRFFVYE----PKALFIPNTYNRFLVVPSGDHLTSLVDEISYISPPAP-PLSQ---IDDIPPEY 622
            |...:.|.    .:.:.:.||..:.     ...|...:..:|:..|..| .|::   :.|...:|
plant   341 PQGSYHYGKINITRTIKLVNTQGKV-----DGKLRYALSGVSHTDPETPLKLAEYFGVADKVFKY 400

  Fly   623 FCNGDNRPPNCGPNCEC-THMVDIPLGAIVEVVLVDEVQQVNLSHPFHLHGTAFYVVGLGR---S 683
            ....||..|:...|.:. .::::|.....:|||..:..:.|   ..:||.|.:|:.|.:..   :
plant   401 DTISDNPNPDQIKNIKIEPNVLNITHRTFIEVVFENHERSV---QSWHLDGYSFFAVAVEPGTWT 462

  Fly   684 PDKSIKKINLKHALELDQMGMLERHFSKPPLKDTIAVPNNGYVVIRFRADNPGYW 738
            |:|. |..||..|        :.||        |:.|....:..|....||.|.|
plant   463 PEKR-KNYNLLDA--------VSRH--------TVQVYPKCWAAILLTFDNCGMW 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stwNP_001137606.1 ascorbase 230..756 CDD:274555 128/541 (24%)
CuRO_1_tcLCC2_insect_like 230..333 CDD:259927 31/105 (30%)
CuRO_2_tcLCC_insect_like 352..500 CDD:259951 38/159 (24%)
CuRO_3_tcLLC2_insect_like 599..767 CDD:259972 35/148 (24%)
sks12NP_175953.1 PLN02354 2..554 CDD:177987 135/575 (23%)
CuRO_1_AAO_like_1 31..146 CDD:259915 33/116 (28%)
CuRO_2_AAO_like_1 160..300 CDD:259940 40/169 (24%)
CuRO_3_AAO_like_1 381..506 CDD:259961 34/140 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.960

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