DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stw and SKS6

DIOPT Version :9

Sequence 1:NP_001137606.1 Gene:stw / 35494 FlyBaseID:FBgn0286203 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_564479.1 Gene:SKS6 / 840792 AraportID:AT1G41830 Length:542 Species:Arabidopsis thaliana


Alignment Length:601 Identity:133/601 - (22%)
Similarity:220/601 - (36%) Gaps:157/601 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   233 ERGILTANRMIPGPSIQVCENDKVVIDVENHMEGMEVTIHWHGIWQRGSQYYDGVPFVTQCPIQQ 297
            ::||| .|...|||.|....||.::|:|.|.:: ....|.|:|:..|.:.|.||: :.|.|||..
plant    47 QQGIL-INGQFPGPDIHSVTNDNLIINVHNSLD-EPFLISWNGVQNRRNSYVDGM-YGTTCPIPP 108

  Fly   298 GNTFRY--QWTGNAGTHFWHAHTGLQKLDGLYGSV-VVRQP----PSRDPNSHLYDFDLTTHIML 355
            .:.:.|  |.....|:.::.......|..|.:|.: ::.:|    |..||..     |.|   :|
plant   109 RSNYTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPGIPVPFADPAG-----DYT---VL 165

  Fly   356 ISDWL---HEDAAERYPGRLAVNTGQ---DPESMLINGKGQFRDPNTGFMTNTPLEIFTITPGRR 414
            |.||.   |.|...|      ::.|:   .|:.:||||:      :.|...|       :..|:.
plant   166 IGDWYKFNHTDLKSR------LDRGRKLPSPDGILINGR------SNGATLN-------VEQGKT 211

  Fly   415 YRFRMINAFASVCPAQVTIEGHGMTVIATDGEPVHPVDVNTIISFSGERYDFVISADQPVGAYWI 479
            ||.|:.|. .........|:.|.|.::..:|........:::....|:.|..:|:|||....|::
plant   212 YRLRISNV-GLQDSLNFRIQNHRMKLVEVEGTHTLQTMFSSLDVHVGQSYSVLITADQSPRDYYV 275

  Fly   480 QLRGLGECGIRRAQQL----AILRYARGPYQPASSPPTYDVGIPQGVILNPLDAICDRKRADAVC 540
            .:..      |...::    .:|||: |...|||.|      ||.|..:          :.|   
plant   276 VVSS------RFTDKIITTTGVLRYS-GSSTPASGP------IPGGPTI----------QVD--- 314

  Fly   541 VSNLKNAKKVDKGVLVERPDVKIFLPFRFFVYEPKALFIPNTYNRFLVVPSGDHLTSL------- 598
             .:|..|:.:...:....|.                   ||        |.|.:...|       
plant   315 -WSLNQARAIRTNLTASGPR-------------------PN--------PQGSYHYGLIPLIRTI 351

  Fly   599 ----------------VDEISYISPPAPPLSQID--DIPPEYFCNGDNRPPNCGPNCECTHMVDI 645
                            |:.:|:: |...||...|  .|...|..|..:..|..|.....|.::.:
plant   352 VFGSSAGQINGKQRYGVNSVSFV-PADTPLKLADFFKISGVYKINSISDKPTYGGLYLDTSVLQV 415

  Fly   646 PLGAIVEVVLVDEVQQVNLSHPFHLHGTAFYVVGL--GRSPDKSIKKINLKHALELDQMGMLERH 708
            .....:|:|..:   |.::...:||:|.:|:|||:  |:....|....||:.|:.          
plant   416 DYRTFIEIVFEN---QEDIVQSYHLNGYSFWVVGMDGGQWKTGSRNGYNLRDAVS---------- 467

  Fly   709 FSKPPLKDTIAVPNNGYVVIRFRADNPGYWLFHCHFLFHIVIGMNLIFHIGTTA----DLPPVPP 769
                  :.|:.|....:..|....||.|.|.....|.....:|..|...:.|::    |..|:|.
plant   468 ------RSTVQVYPKSWTAIYIALDNVGMWNLRSEFWARQYLGQQLYLRVFTSSTSLRDEYPIPK 526

  Fly   770 RFPTC----GDHVPPV 781
            ....|    |.|..|:
plant   527 NSRLCGRARGRHTRPL 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stwNP_001137606.1 ascorbase 230..756 CDD:274555 125/566 (22%)
CuRO_1_tcLCC2_insect_like 230..333 CDD:259927 30/102 (29%)
CuRO_2_tcLCC_insect_like 352..500 CDD:259951 33/157 (21%)
CuRO_3_tcLLC2_insect_like 599..767 CDD:259972 39/175 (22%)
SKS6NP_564479.1 PLN02991 12..539 CDD:215536 131/596 (22%)
CuRO_1_AAO_like_1 30..145 CDD:259915 30/100 (30%)
Cupredoxin 160..294 CDD:302766 35/167 (21%)
Cupredoxin 375..496 CDD:302766 32/139 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454773at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.880

Return to query results.
Submit another query.