DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stw and TT10

DIOPT Version :9

Sequence 1:NP_001137606.1 Gene:stw / 35494 FlyBaseID:FBgn0286203 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_199621.2 Gene:TT10 / 834862 AraportID:AT5G48100 Length:565 Species:Arabidopsis thaliana


Alignment Length:608 Identity:163/608 - (26%)
Similarity:248/608 - (40%) Gaps:151/608 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 RGILTANRMIPGPSIQVCENDKVVIDVENHMEGMEVTIHWHGIWQRGSQYYDGVPFVTQCPIQQG 298
            :.|||.|...|||.|:|.:.|.:.::|:|. ....:|:||||:.|..:.:.||..::|||||:.|
plant    40 KAILTVNSQFPGPIIKVHKGDTIYVNVQNR-ASENITMHWHGVEQPRNPWSDGPEYITQCPIRPG 103

  Fly   299 NTFRYQ--WTGNAGTHFWHAHTGLQKLDGLYGSV-VVRQPPSRDPNSHLYDFDLTTH--IMLISD 358
            :.|.|:  ::....|.:||||:...:.. ::|.: |..:||      .:..|....|  .:::.:
plant   104 SDFLYKVIFSIEDTTVWWHAHSSWTRAT-VHGLIFVYPRPP------QILPFPKADHEVPIILGE 161

  Fly   359 WLHED---AAERYPGRLAVNTGQDP---ESMLINGKGQFRDPNTGFMTNTPLEIFTITPGRRYRF 417
            |...|   ..|.:     |.||..|   :::.|||...|..|    .:.:.....|:..|:.||.
plant   162 WWKRDVREVVEEF-----VRTGGAPNVSDALTINGHPGFLYP----CSKSDTFHLTVEKGKTYRI 217

  Fly   418 RMINAFASVCPAQVTIEGHGMTVIATDGEPVHPVDVNTIISFSGERYDFVISADQ-PVGAYWIQL 481
            ||:|| |...|....|..|.:||::.||..:.|:....|....||..|.::.||| |...|::..
plant   218 RMVNA-AMNLPLFFAIANHSLTVVSADGHYIKPIKATYITISPGETLDMLLHADQDPERTYYMAA 281

  Fly   482 RGL--GECGIRRAQQLAILRYARGPYQPASSPPTYDVGIPQGVILNPLDAICDRKRADAVCVSNL 544
            |..  |......:..:.||.|........||...|...:|   ..|...|               
plant   282 RAYQSGNIDFNNSTTIGILSYTSSCKAKTSSFSGYYPTLP---FYNDTSA--------------- 328

  Fly   545 KNAKKVDKGVLVERPDVKIFLPFRFFVYEPKALF---IPNTYNRFLVV----------------P 590
                                 .|.||. :.|.||   :|...:|.::.                |
plant   329 ---------------------AFGFFT-KIKCLFSGQVPVQISRRIITTVSINLRMCPQNSCEGP 371

  Fly   591 SGDHLTSLVDEISYISPPAPPLSQID------------------DIPPEYF-CNGDNRPPNCGPN 636
            :|..|.:.::.||:::|     |.:|                  :.||..| ...:|:|......
plant   372 NGSRLAASMNNISFVTP-----SHVDILKAYYYHIKGVYGTRFPEFPPLIFNFTAENQPLFLETP 431

  Fly   637 CECTHMVDIPLGAIVEVVLVDEVQQVN-----LSHPFHLHGTAFYVVGLG-----RSPDKSIKKI 691
            ...|.:..|..|.:||:|    :|..:     |.||.||||.:|||||:|     .|.:....:.
plant   432 RLATEVKVIEFGQVVELV----IQGTSLVGGGLDHPMHLHGFSFYVVGVGFGNYNISEEDPSSRY 492

  Fly   692 NLKHALELDQMGMLERHFSKPPLKDTIAVPNNGYVVIRFRADNPGYWLFHCHFLFHIVIGMNLIF 756
            ||                ..||.|:|:.||.||::.|||.|||||.|..|||...|...|||::|
plant   493 NL----------------YDPPYKNTMTVPRNGWIAIRFVADNPGVWFMHCHLDRHQTWGMNVVF 541

  Fly   757 HIGTTAD-----LPPVPPRFPTC 774
            .:....:     ||| |...|.|
plant   542 IVKNGREPNQQILPP-PDDLPPC 563

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stwNP_001137606.1 ascorbase 230..756 CDD:274555 156/583 (27%)
CuRO_1_tcLCC2_insect_like 230..333 CDD:259927 35/101 (35%)
CuRO_2_tcLCC_insect_like 352..500 CDD:259951 43/158 (27%)
CuRO_3_tcLLC2_insect_like 599..767 CDD:259972 60/201 (30%)
TT10NP_199621.2 laccase 19..553 CDD:274556 157/595 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 85 1.000 Domainoid score I2814
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG58299
OrthoDB 1 1.010 - - D454773at2759
OrthoFinder 1 1.000 - - FOG0000424
OrthoInspector 1 1.000 - - mtm1062
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X253
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.890

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