DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stw and sks15

DIOPT Version :9

Sequence 1:NP_001137606.1 Gene:stw / 35494 FlyBaseID:FBgn0286203 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_195433.1 Gene:sks15 / 829870 AraportID:AT4G37160 Length:541 Species:Arabidopsis thaliana


Alignment Length:606 Identity:147/606 - (24%)
Similarity:233/606 - (38%) Gaps:165/606 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   231 GVERGILTANRMIPGPSIQVCENDKVVIDVENHMEGMEVTIHWHGIWQRGSQYYDGVPFVTQCPI 295
            ||.:.::..|...|||:|:...|:.:|:::.|.:: ....|.|:|:.||.:.:.||| ..|.|||
plant    46 GVPQQVILINGQFPGPAIEAVTNNNIVVNLINKLD-EPFLITWNGVKQRRTSWQDGV-LGTNCPI 108

  Fly   296 QQGN--TFRYQWTGNAGTHFWHAHTGLQKLDGLYGSVVVRQ-----PPSRDPNSHLYDFDLTTHI 353
            |..:  |:::|.....||:.:.|.|.|.:..|.:|::.:.|     .|...|     |.|.|   
plant   109 QPNSNWTYQFQLKDQIGTYTYFASTSLHRASGAFGALNINQRSVITTPYPTP-----DGDFT--- 165

  Fly   354 MLISDWL----HEDAAERYPGRLAVNTGQD---PESMLING--KGQFRDPNTGFMTNTPLEIFTI 409
            :|:|||.    |:|.      |.:::.|..   |:::||||  ||.               |||.
plant   166 LLVSDWFSNMTHKDL------RKSLDAGSALPLPDALLINGVSKGL---------------IFTG 209

  Fly   410 TPGRRYRFRMINAFASVCPAQVTIEGHGMTVIATDG-----EPVHPVDVN------TIISFSGER 463
            ..|:.|:||:.|. .........|:.|.|::|..:|     |....:||:      .:::.....
plant   210 QQGKTYKFRVSNV-GIATSINFRIQNHTMSLIEVEGAHTLQESYESLDVHVGQSMTVLVTLKASV 273

  Fly   464 YDFVISAD----QPVGAYWIQLRGLGECGIRRAQQLAILRY---ARGPYQPASSPPTYDVGIPQG 521
            .|:.|.|.    :||                 ....|.|||   ....|.|....|||.:.    
plant   274 RDYFIVASTRFTKPV-----------------LTTTASLRYQGSKNAAYGPLPIGPTYHIH---- 317

  Fly   522 VILNPLDAICDRKRADAVCVSNLKNAKKVDKGVLVERPDVKIFLPFRFFVYEPKALF----IPNT 582
                     ...|:|..:.::...||         .||:             |:..|    ||  
plant   318 ---------WSMKQARTIRMNLTANA---------ARPN-------------PQGSFHYGTIP-- 349

  Fly   583 YNRFLVVPSG-----DHLTSLVDEISYISPPAP-PLSQIDDIPPEYFCNGDNRPPNCGPNCECTH 641
            .||.||:.:.     ..|...|:.||||:|..| .|:...:|...:........|..||....|.
plant   350 INRTLVLANAATLIYGKLRYTVNRISYINPTTPLKLADWYNISGVFDFKTIISTPTTGPAHIGTS 414

  Fly   642 MVDIPLGAIVEVVLVDEVQQVNLSHPFHLHGTAFYVVGLGRSPDKSI---KKINLKHALELDQMG 703
            ::|:.|...||:|..::.:.:   ..:|:.||:.|.||.| |...::   |:.||..|       
plant   415 VIDVELHEFVEIVFQNDERSI---QSWHMDGTSAYAVGYG-SGTWNVTMRKRYNLVDA------- 468

  Fly   704 MLERH-FSKPPLKDTIAVPNNGYVVIRFRADNPGYWLFHCHFLFHIVIGMNLIFHIG-------T 760
             :.|| |...||         .:..|....||.|.|...........:|..|...:.       |
plant   469 -VPRHTFQVYPL---------SWTTILVSLDNKGMWNLRSQIWSRRYLGQELYVRVWNDEKSLYT 523

  Fly   761 TADLPPVPPRFPTCGDHVPPV 781
            .|: ||:...:  ||....|:
plant   524 EAE-PPLNVLY--CGKAKRPL 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stwNP_001137606.1 ascorbase 230..756 CDD:274555 140/572 (24%)
CuRO_1_tcLCC2_insect_like 230..333 CDD:259927 32/103 (31%)
CuRO_2_tcLCC_insect_like 352..500 CDD:259951 38/171 (22%)
CuRO_3_tcLLC2_insect_like 599..767 CDD:259972 45/179 (25%)
sks15NP_195433.1 PLN02835 4..537 CDD:178429 146/600 (24%)
Cupredoxin 32..148 CDD:302766 32/103 (31%)
Cupredoxin 162..297 CDD:302766 40/176 (23%)
Cupredoxin 378..499 CDD:302766 35/141 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454773at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.880

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