DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stw and sks4

DIOPT Version :9

Sequence 1:NP_001137606.1 Gene:stw / 35494 FlyBaseID:FBgn0286203 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_193932.1 Gene:sks4 / 828290 AraportID:AT4G22010 Length:541 Species:Arabidopsis thaliana


Alignment Length:583 Identity:134/583 - (22%)
Similarity:226/583 - (38%) Gaps:130/583 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   231 GVERGILTANRMIPGPSIQVCENDKVVIDVENHMEGMEVTIHWHGIWQRGSQYYDGVPFVTQCPI 295
            ||::..:..|...|||.|....||.::|.|.|::: ....|.|:|:.||.:.:.||| ..|.|||
plant    41 GVKQQGILINGQFPGPHIDAITNDNIIISVFNYLK-EPFLISWNGVQQRKNSWQDGV-VGTTCPI 103

  Fly   296 QQGNTFRY--QWTGNAGTHFWHAHTGLQKLDGLYGSVVV----RQP-PSRDPNSHLYDFDLTTHI 353
            ..|..|.|  |.....|:.::.......|..|.:|::.|    |.| |...|:...:        
plant   104 PPGKNFTYVIQVKDQIGSFYYFPSLAFHKAAGAFGAIRVWSRPRIPVPFSPPDGDFW-------- 160

  Fly   354 MLISDWLHEDAAERYPGRLAVNTGQ---DPESMLINGKGQFRDPNTGFMTNTPLEIFTITPGRRY 415
            :|..||.   ....|..|..:..|:   :|:.:||||:        |:..||    ||:.||:.|
plant   161 LLAGDWY---KTNHYVLRRLLEAGRNLPNPDGVLINGR--------GWGGNT----FTVQPGKTY 210

  Fly   416 RFRMINAFASVCPAQVTIEGHGMTVIATDGEPVHPV-DVNTIISFS-GERYDFVISADQPVGAYW 478
            |||:.|...:. .....|:||.|.::..:|.  |.| ::.|.:... |:.|..:::|:|....|:
plant   211 RFRISNVGVAT-SLNFRIQGHTMKLVEVEGS--HTVQNIYTSLDIHLGQSYSVLVTANQAPQDYY 272

  Fly   479 IQLRGLGECGIRRAQQL----AILRYA---RGPYQPASSPPTYDVGIPQGVILNPLDAICDRKRA 536
            |.:..      |..:::    :||.|:   :|...|..:.||.|:                    
plant   273 IVISS------RFTRKVLTTTSILHYSNSRKGVSGPVPNGPTLDI-------------------- 311

  Fly   537 DAVCVSNLKNAKKVDKGVLVE--RPDVK------IFLPFRFFVYEPKALFIPNTYNRFLVVPSGD 593
                .|:|..|:.:.:.:...  ||:.:      :..|.|..:....|.:| |...|:       
plant   312 ----ASSLYQARTIRRNLTASGPRPNPQGSYHYGLIKPGRTIILANSAPWI-NGKQRY------- 364

  Fly   594 HLTSLVDEISYISPPAP-PLSQIDDIPPEYFCNGDNRPPNCGPNCECTHMVDIPLGA----IVEV 653
                .|:..|:::|..| .|:....||..:........|:.|..   .::....:.|    .:||
plant   365 ----AVNGASFVAPDTPLKLADYFKIPGVFNLGSIPTSPSGGNG---GYLQSSVMAANFREFIEV 422

  Fly   654 VLVDEVQQVNLSHPFHLHGTAFYVVGL--GRSPDKSIKKINLKHALELDQMGMLERHFSKPPLKD 716
            |..:....|   ..:|:.|.:|:|||:  |:....|..|.||:.|:.                :.
plant   423 VFQNWENSV---QSWHVSGYSFFVVGMDGGQWTPGSRAKYNLRDAVS----------------RS 468

  Fly   717 TIAVPNNGYVVIRFRADNPGYWLFHCHFLFHIVIGMNLIFHIGTTA----DLPPVPPRFPTCG 775
            |:.|....:..|....||.|.|...........:|......:.|::    |..|.|.....||
plant   469 TVQVYPRAWTAIYIALDNVGMWNIRSENWARQYLGQQFYLRVYTSSTSYRDEYPPPKNALMCG 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stwNP_001137606.1 ascorbase 230..756 CDD:274555 128/558 (23%)
CuRO_1_tcLCC2_insect_like 230..333 CDD:259927 33/107 (31%)
CuRO_2_tcLCC_insect_like 352..500 CDD:259951 40/156 (26%)
CuRO_3_tcLLC2_insect_like 599..767 CDD:259972 36/178 (20%)
sks4NP_193932.1 PLN02991 9..538 CDD:215536 134/583 (23%)
Cupredoxin 27..142 CDD:302766 32/102 (31%)
Cupredoxin 157..292 CDD:302766 40/166 (24%)
Cupredoxin 374..496 CDD:302766 31/143 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454773at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.880

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