DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stw and SKU5

DIOPT Version :9

Sequence 1:NP_001137606.1 Gene:stw / 35494 FlyBaseID:FBgn0286203 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_001190704.1 Gene:SKU5 / 826851 AraportID:AT4G12420 Length:587 Species:Arabidopsis thaliana


Alignment Length:586 Identity:146/586 - (24%)
Similarity:235/586 - (40%) Gaps:127/586 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 CREGEPPRICYYHFTLEYYTVLGAACQVCTPNATNTVWSHCQCVLADGVERGILTANRMIPGPSI 248
            |...:|  ..:|:|.:.|.|        .:|.               ||.:.::..|...|||:|
plant    18 CFAADP--YSFYNFEVSYIT--------ASPL---------------GVPQQVIAINGKFPGPTI 57

  Fly   249 QVCENDKVVIDVENHM-EGMEVTIHWHGIWQRGSQYYDGVPFVTQCPI--QQGNTFRYQWTGNAG 310
            .|..|:.:|::|.|.: ||:  .:||:||.||...:.||| ..|.|||  :...|:.:|.....|
plant    58 NVTTNENLVVNVRNKLDEGL--LLHWNGIQQRRVSWQDGV-LGTNCPIPPKWNWTYEFQVKDQIG 119

  Fly   311 THFWHAHTGLQKLDGLYGSVVVR-----QPPSRDPNSHLYDFDLTTHIMLISDWLHEDAAERYPG 370
            :.|:......|:..|.:||.||.     ..|...|     |.|:|   :.|.||...:....   
plant   120 SFFYFPSLHFQRASGGFGSFVVNPRAIIPVPFSTP-----DGDIT---VTIGDWYIRNHTAL--- 173

  Fly   371 RLAVNTGQD---PESMLINGKGQFRDPNTGFMTNTPLEIFTITPGRRYRFRMINAFASVCPAQVT 432
            |.|::.|:|   |:.:||||||.:|..:|........|..|:.||:.||.|:.|...|. .....
plant   174 RKALDDGKDLGMPDGVLINGKGPYRYNDTLVADGIDFETITVHPGKTYRLRVSNVGIST-SLNFR 237

  Fly   433 IEGHGMTVIATDGEPVHPVDVNTIISFSGERYDFVISADQPVGA-YWI--QLRGLGECGIRRAQQ 494
            |:||.:.:..::|......:..::....|:.|.|:::.||...: |:|  ..|.:.|...||...
plant   238 IQGHNLVLAESEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASSDYYIVASARVVNETIWRRVTG 302

  Fly   495 LAILRY------ARGPYQPASSPPTYDVGIPQGVILNPLDAICDRKRADAVCVSNLKNAKKVDKG 553
            :.||:|      |:|...|                 .|.|.. |:       ..::..|:.:...
plant   303 VGILKYTNSKGKAKGQLPP-----------------GPQDEF-DK-------TFSMNQARSIRWN 342

  Fly   554 VLVE--RPDVKIFLPFRFFVYEPKALFIPNTY---NRFLVVPSGDHLTSLVDEISYISPPAP--- 610
            |...  ||:     |...|.|  .::.:.:.|   |...|..||...|:| :.||:.:|..|   
plant   343 VSASGARPN-----PQGSFKY--GSINVTDVYVLRNMPPVTISGKRRTTL-NGISFKNPSTPIRL 399

  Fly   611 -PLSQIDDIPPEYFCNGDNRPPNCGPNCECTHMVDIPLGAIVEVVLVDEVQQVNLSHPFHLHGTA 674
             ...::.|:   |..:...||.. ||....|.:::......:||||.:...::   ..:|:.|.|
plant   400 ADKLKVKDV---YKLDFPKRPLT-GPAKVATSIINGTYRGFMEVVLQNNDTKM---QSYHMSGYA 457

  Fly   675 FYVVGL--GRSPDKSIKKINLKHALELDQMGMLERHFSKPPLKDTIAVPNNGYVVIRFRADNPGY 737
            |:|||:  |...:.|....|....:                .:.||.|....:..|....||||.
plant   458 FFVVGMDYGEWTENSRGTYNKWDGI----------------ARSTIQVYPGAWSAILISLDNPGA 506

  Fly   738 W 738
            |
plant   507 W 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stwNP_001137606.1 ascorbase 230..756 CDD:274555 139/540 (26%)
CuRO_1_tcLCC2_insect_like 230..333 CDD:259927 36/105 (34%)
CuRO_2_tcLCC_insect_like 352..500 CDD:259951 42/153 (27%)
CuRO_3_tcLLC2_insect_like 599..767 CDD:259972 34/146 (23%)
SKU5NP_001190704.1 PLN00044 20..557 CDD:165622 145/584 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454773at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.880

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