DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stw and sks11

DIOPT Version :9

Sequence 1:NP_001137606.1 Gene:stw / 35494 FlyBaseID:FBgn0286203 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_187947.1 Gene:sks11 / 820539 AraportID:AT3G13390 Length:554 Species:Arabidopsis thaliana


Alignment Length:587 Identity:135/587 - (22%)
Similarity:225/587 - (38%) Gaps:150/587 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 AACQVCTPNAT----------NTVWSHCQCVLAD-GVERGILTANRMIPGPSIQVCENDKVVIDV 260
            |||......||          :.||:.....::. ||.:.::..|...|||::....|:.|:|:|
plant     8 AACLYLAAAATVVVRAEDPYFHHVWNVTYGTVSPLGVPQQVILINGQFPGPNVNSTSNNNVIINV 72

  Fly   261 ENHMEGMEVTIHWHGIWQRGSQYYDGVPFVTQCPIQQGN--TFRYQWTGNAGTHFWHAHTGLQKL 323
            .|::: ....:.|:||..|.:.:.||.| .|.|||..|.  |:.:|.....|::|::..|.:.:.
plant    73 FNNLD-EPFLLTWNGIQHRKNCWQDGTP-GTMCPIMPGTNYTYHFQPKDQIGSYFYYPSTAMHRS 135

  Fly   324 DGLYGSVVVRQ-----PPSRDPNSHLYDFDLTTHIMLISDWLHEDAAE--------RYPGRLAVN 375
            .|.:|.:.|..     .|..||..     |.|   :||.||..:...:        |..||    
plant   136 AGGFGGLRVNSRLLIPVPYADPED-----DYT---VLIGDWYTKSHTQLKKFLDSGRTLGR---- 188

  Fly   376 TGQDPESMLINGKGQFRDPNTGFMTNTPLEIFTITPGRRYRFRMINAFASVCPAQVTIEGHGMTV 440
                |:.:|||||.     ..|..::.||  ||:.||:.||.|:.|..... .....|:.|.:.:
plant   189 ----PDGILINGKS-----GKGDGSDAPL--FTLKPGKTYRVRICNVGLKT-SLNFRIQNHKLKL 241

  Fly   441 IATDGEPVHPVDVNTIISFSGERYDFVISADQPVGAYWIQLRGLGECGIRRAQQL-------AIL 498
            :..:|..|...|.:::....|:.|..:::|:|....|::         :..::.|       .:|
plant   242 VEMEGSHVLQNDYDSLDVHVGQCYGTILTANQEAKDYYM---------VASSRFLKSVITTTGLL 297

  Fly   499 RYARGPYQPASSPPTYDVGIPQGVI-----LNPLDAICDRKRADAVCVSNLKNAKKVDKGVLVER 558
            || .|...||||.      :|.|.:     ||...:......|.|.                  |
plant   298 RY-EGGKGPASSQ------LPPGPVGWAWSLNQFRSFRWNLTASAA------------------R 337

  Fly   559 PDVKIFLPFRFFVYE----PKALFIPNTYNRFLVVPSGDHLTSLVDEISYISPPAP-PLSQ---I 615
            |:     |...:.|.    .:.:.:.||..:.     ...|...::.:|:..|..| .|::   :
plant   338 PN-----PQGSYHYGKINITRTIKLVNTQGKV-----DGKLRYALNGVSHTDPETPLKLAEYFGV 392

  Fly   616 DDIPPEYFCNGDNRPP------NCGPNCECTHMVDIPLGAIVEVVLVDEVQQVNLSHPFHLHGTA 674
            .|...:|....||..|      ...||     :::|.....:|||..:..:.|   ..:||.|.:
plant   393 ADKVFKYDSITDNPTPEQIKSIKIVPN-----VLNITHRTFIEVVFENHEKSV---QSWHLDGYS 449

  Fly   675 FYVVGLGR---SPDKSIKKINLKHALELDQMGMLERHFSKPPLKDTIAVPNNGYVVIRFRADNPG 736
            |:.|.:..   :|:|. |..||..|        :.||        |:.|....:..|....||.|
plant   450 FFAVAVEPGTWTPEKR-KNYNLLDA--------VSRH--------TVQVYPKCWAAILLTFDNCG 497

  Fly   737 YW 738
            .|
plant   498 MW 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stwNP_001137606.1 ascorbase 230..756 CDD:274555 128/554 (23%)
CuRO_1_tcLCC2_insect_like 230..333 CDD:259927 30/105 (29%)
CuRO_2_tcLCC_insect_like 352..500 CDD:259951 36/162 (22%)
CuRO_3_tcLLC2_insect_like 599..767 CDD:259972 36/153 (24%)
sks11NP_187947.1 PLN02354 24..553 CDD:177987 130/571 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.870

Return to query results.
Submit another query.