DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stw and sks16

DIOPT Version :9

Sequence 1:NP_001137606.1 Gene:stw / 35494 FlyBaseID:FBgn0286203 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_001324736.1 Gene:sks16 / 816895 AraportID:AT2G23630 Length:546 Species:Arabidopsis thaliana


Alignment Length:588 Identity:150/588 - (25%)
Similarity:223/588 - (37%) Gaps:142/588 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   231 GVERGILTANRMIPGPSIQVCENDKVVIDVENHMEGMEVTIHWHGIWQRGSQYYDGVPFVTQCPI 295
            ||.:.::..|...|||.|:...|:.:|::|.|.:: ....|.|:||.||...:.||| ..|.|||
plant    50 GVPQQVILINGQFPGPPIEGVTNNNIVVNVINKLD-EPFLITWNGIKQRKMSWQDGV-LGTNCPI 112

  Fly   296 QQGN--TFRYQWTGNAGTHFWHAHTGLQKLDGLYGSVVVRQ-----PPSRDPNSHLYDFDLTTHI 353
            |..:  |:.:|.....||:.:.|.|.:.:..|.:|::.|.|     .|...|     |.|.|   
plant   113 QPKSSWTYHFQLKDQIGTYAYFASTSMHRASGAFGALNVNQRSVIFVPYPKP-----DADFT--- 169

  Fly   354 MLISDWL---HEDAAERYPGRLAVNTGQDPESMLING--KGQFRDPNTGFMTNTPLEIFTITPGR 413
            :|:|||.   |::...|.....|:   ..|:.:||||  ||.               :||...|:
plant   170 LLVSDWYKMGHKELQRRLDSSRAL---PPPDGLLINGASKGL---------------VFTGQHGK 216

  Fly   414 RYRFRMINAFASVCPAQVTIEGHGMTVIATDG-----EPVHPVDVNTIISFSGERYDFVISADQP 473
            .||||:.|...|. .....|:||.||::..:|     |....:|::.     |:....:::...|
plant   217 IYRFRISNVGIST-SINFRIQGHMMTLVEVEGSHTLQEVYESLDIHV-----GQSVTVLVTLKAP 275

  Fly   474 VGAYWIQLRGLGECGIRRAQQL----AILRYARG---PYQPASSPPTYDVGIPQGVILNPLDAIC 531
            |..|:|      ....|..:.:    .||.|...   |..|....|||.:.             .
plant   276 VKDYFI------VASTRFTKPILTTTGILSYQGSKIRPSHPLPIGPTYHIH-------------W 321

  Fly   532 DRKRADAVCVSNLKNAKKVDKGVLVERPDVKIFLPFRFFVYEPKALF----IPNTYNRFLVVPSG 592
            ..|:|..:.::...||         .||:             |:..|    ||  .||..|:.:|
plant   322 SMKQARTIRLNLTANA---------ARPN-------------PQGSFHYGTIP--INRTFVLANG 362

  Fly   593 -----DHLTSLVDEISYISPPAPPLSQID--DIPPEYFCNGDNRPPNCGPNCECTHMVDIPLGAI 650
                 ..|...|:.:||:: ||.||...|  :||..:........|..||:...|.:.|:.|...
plant   363 RAMINGKLRYTVNRVSYVN-PATPLKLADWFNIPGVFNFKTIMNIPTPGPSILGTSVFDVALHEY 426

  Fly   651 VEVVLVDEVQQVNLSHPFHLHGTAFYVVGLGRSPDKSIKK--INLKHALELDQMGMLERHFSKPP 713
            ||.|..:....:   ..:||.||:.||||.|.......|:  .||..|        :.||     
plant   427 VEFVFQNNEGSI---QSWHLDGTSAYVVGYGSGTWNMAKRRGYNLVDA--------VSRH----- 475

  Fly   714 LKDTIAVPNNGYVVIRFRADNPGYWLFHCHFLFHIVIGMNLIFHIGT------TADLPPVPPRFP 772
               |..|....:..|....||.|.|...........:|..|...:..      |...|||...| 
plant   476 ---TFQVYPMSWTSILVSLDNKGMWNLRSQIWSRRYLGQELYVRVWNNEKSLYTESEPPVNVLF- 536

  Fly   773 TCG 775
             ||
plant   537 -CG 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stwNP_001137606.1 ascorbase 230..756 CDD:274555 143/561 (25%)
CuRO_1_tcLCC2_insect_like 230..333 CDD:259927 33/103 (32%)
CuRO_2_tcLCC_insect_like 352..500 CDD:259951 39/161 (24%)
CuRO_3_tcLLC2_insect_like 599..767 CDD:259972 45/177 (25%)
sks16NP_001324736.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454773at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.880

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