DRSC/TRiP Functional Genomics Resources

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Protein Alignment stw and Mco1

DIOPT Version :10

Sequence 1:NP_610170.2 Gene:stw / 35494 FlyBaseID:FBgn0286203 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_609287.3 Gene:Mco1 / 34258 FlyBaseID:FBgn0032116 Length:959 Species:Drosophila melanogaster


Alignment Length:711 Identity:250/711 - (35%)
Similarity:384/711 - (54%) Gaps:103/711 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 TSATAELRRNPALSAPD----------ECARACREGEPPRICYYHFTLEYYTVLGAACQVCTPNA 216
            |:...||:.|.|.|..|          .|.|.|:.|..|..|.|.|.:|:|.....||..|..|.
  Fly   217 TARIEELQDNVAESTDDIWTAEWYRNHPCNRDCQVGAEPMTCRYKFVVEWYQTFSKACYDCPRNL 281

  Fly   217 TNTVWSHCQCVLADGVERGILTANRMIPGPSIQVCENDKVVIDVENHMEGMEVTIHWHGIWQRGS 281
            |:....|  ||:.||:||.|...|||:|||:|:|||.|::|:||:||:.|...:|||||:.|:.:
  Fly   282 TDCSRPH--CVMGDGLERSITVVNRMMPGPAIEVCEGDEIVVDVKNHLLGESTSIHWHGLHQKKT 344

  Fly   282 QYYDGVPFVTQCPIQQGNTFRYQWTGN-AGTHFWHAHTGLQKLDGLYGSVVVRQPPSRDPNSHLY 345
            .|.||||.:|||||....||||.:..: :||||||:|||:|:.||::|::::|:|.:.:|:..||
  Fly   345 PYMDGVPHITQCPITPHATFRYSFPADLSGTHFWHSHTGMQRGDGVFGALIIRKPKTAEPHGGLY 409

  Fly   346 DFDLTTHIMLISDWLHEDAAERYPGRLAVNTGQDPESMLINGKGQFRD----------------- 393
            ||||:.|:|::.||:|:..|..:...........|.::|:||||::.:                 
  Fly   410 DFDLSEHVMIVQDWIHDTGASIFSYHHHSRGDNKPHNLLVNGKGRYYNRIWAEAKQAHRRAEERT 474

  Fly   394 --------------------------PNT------------GFMTNTPLE-----IFTITPGRRY 415
                                      .||            |.:...|||     |:|:..|.||
  Fly   475 TQPVEPLPKSQVDFVQTLPRQARLAKTNTTKLFPVNSRQKRGNLNEIPLELVPHQIYTVRRGFRY 539

  Fly   416 RFRMINAFASVCPAQVTIEGHGMTVIATDGEPVHPVDVNTIISFSGERYDFVISADQPVGAYWIQ 480
            |||:|||....||..|:|:||.:|.|.:||..:..:||.:|:::||||:|||::|:..||.|||:
  Fly   540 RFRIINAEYLNCPIVVSIDGHNLTAINSDGFDIEAMDVGSIVTYSGERFDFVLNANLEVGNYWIR 604

  Fly   481 LRGLGECG--IRRAQQLAILRYARGPYQPASSPPTYDVGI---PQGVVMNPLDAQCNRQRN--DA 538
            |:||.:|.  ...|.|:|||||...|    ...||.::..   .:|:.:|.:    ||...  |.
  Fly   605 LKGLMDCSEVFTSAFQVAILRYEGAP----DEEPTAELSYGHKAEGIELNVM----NRGPGYPDT 661

  Fly   539 ICVSQLK------NALEIDRGILAEKPDVKIFLPFRFFVYRAEDLFQPNTYNRFLVASDADHLIS 597
            ..|::::      :...||...|..:.|.|.|:.:.|:.....|....:.|...:..:..:.|.:
  Fly   662 KTVAEMRALPIYDHVSGIDHDTLKPEADYKFFIYYDFYTKNNPDFHDKDLYAMDMEMTQQNRLYT 726

  Fly   598 -LIDEVSYISPPSPMLSQYNDIPQEYYCNGD---NRPVDC-GENCQCTHKIDVPLNAIVEVVLVD 657
             .::.::...|...:|...:.:....:||..   ::.:|| .|.|:|.|.:.|||.|:||:::||
  Fly   727 PQLNHITLNFPSLALLPSRSQLKDSDFCNETSLMDQGIDCRQEFCKCHHVLQVPLGAVVEMIIVD 791

  Fly   658 EVQQINISHPFHLHGTSFYVLGLGRSPDKQIQRMNLKHALELDQRGLLERQYLKPSLKDTVAVPN 722
            |..|...:|||||||.:|.|:||.|..    :.:.::...:|||..||:|....|.:||||.:|:
  Fly   792 EGFQYYANHPFHLHGNAFRVMGLERLG----ENVTVEMIKQLDQFNLLKRNLDNPPVKDTVTIPD 852

  Fly   723 NGYAILRFRADNPGFWLFHCHFQYHIVIGMNLVFQIGTPNDLPPVPPNFPRCGNHLPPIKT 783
            .||.|:||.|.|||:||||||.::|..|||.|||::|..:.:.|||.|||.||::.|.:::
  Fly   853 GGYTIIRFEASNPGYWLFHCHIEFHAEIGMALVFKVGNDDQMVPVPENFPTCGDYNPDLRS 913

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stwNP_610170.2 ascorbase 230..775 CDD:274555 222/623 (36%)
Mco1NP_609287.3 VWC 150..212 CDD:214564
CuRO_1_tcLCC2_insect_like 293..397 CDD:259927 55/103 (53%)
CuRO_2_tcLCC_insect_like 415..626 CDD:259951 64/210 (30%)
CuRO_3_tcLLC2_insect_like 728..897 CDD:259972 67/172 (39%)
Blue background indicates that the domain is not in the aligned region.

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