DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stw and f5

DIOPT Version :9

Sequence 1:NP_001137606.1 Gene:stw / 35494 FlyBaseID:FBgn0286203 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_001315460.1 Gene:f5 / 327320 ZFINID:ZDB-GENE-030131-5531 Length:2087 Species:Danio rerio


Alignment Length:644 Identity:116/644 - (18%)
Similarity:199/644 - (30%) Gaps:204/644 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   245 GPSIQVCENDKVVIDVENHMEGMEVTIHWHGI----WQRGSQYYDGVPFVTQCP--IQQGNTFRY 303
            ||:::..|.|.:::...| |.....::|.|||    ...||.|:|....:.:..  ||.|....|
Zfish    78 GPTLRGQEGDTIIVTFRN-MADHPCSLHPHGIAYGKQSEGSLYFDNTSLLEKNDDVIQPGEEHTY 141

  Fly   304 QW------TGNAGTHFWHAHTGLQKLD-------GLYGSVVVRQPPSRDPNSHLYDFDLTTHIML 355
            ||      |..|.......:|.|...|       ||.|.:::.:..:.|.:.:...|        
Zfish   142 QWDVTSDVTPTAADPPCITYTYLSHFDIVRDYNTGLIGPMLICKKGTLDDSGNQIHF-------- 198

  Fly   356 ISDWLHEDAAERY----PGRLAVNTGQDPESM----LINGKGQFRDPNTGFMTNTPLEIFTITPG 412
                 |:::...:    ..:...:||..|:.:    .|||           .||..:....|...
Zfish   199 -----HQESVLLFGVFDENKSWYSTGDSPQPLNVKYTING-----------YTNGSVPDLDICAH 247

  Fly   413 RRYRFRMINAFASVCPAQVTIEGHGMTVIATDGEPVHPVDVNTIISFSGERYDFVISADQPVGAY 477
            .:..:.::...:.  |...::..:|. |:..||.....|.:     .||......::...| |.:
Zfish   248 SKVSWHLLGMSSE--PELFSVHFNGQ-VLLHDGHKTSAVGI-----ISGTATSASMTGVHP-GRW 303

  Fly   478 WIQLR-------GL-GECGIRR--------------------------AQQLAILRYARGPYQPA 508
            .:...       || |...||:                          |.:..|..||  |..|.
Zfish   304 LVSSHISKHLEAGLHGYLNIRKCDEYTAPKRRLTIEQKKESQEWTYYMAAEEVIWDYA--PNMPE 366

  Fly   509 S------------SPPTYDVGIPQGVILNPLDAICDRKRADAVCVSNLKNAKKVDKGVL--VERP 559
            :            .|........:.|.....|.:...:..|        ..:|.:.|:|  |.|.
Zfish   367 NMDGDFRSKYLKQGPQRIGKKYKKAVFTQYKDGMFKERAED--------KQRKRELGILGPVIRA 423

  Fly   560 DVKIFLPFRFFVYEPKALFIPNTYNRFLVVPSGDHLTSLVDEISYISPPAPPLSQIDDIPP---- 620
            .::..:         |.:|.......:.:.|.|..:....:..||  |...  :|...:.|    
Zfish   424 QIRDII---------KIVFKNKASRPYSIYPHGLTIDKAAEGASY--PQGG--NQTYSVQPGETY 475

  Fly   621 --EYFCNGDNRPPNCGPNCECTHM----VDIP---LGAIVEVVLVDEVQQVNLSH-------PFH 669
              .:....::.|.:..|.| .|.|    ||.|   ...:|..:|:.:.|.:|..:       ..|
Zfish   476 TYTWSVTEEDVPTDSDPRC-LTRMYHSAVDAPRDIASGLVGPLLICKSQSLNKKNVQLKADKEQH 539

  Fly   670 LHGTAF------YV---VGLGRSPDKSIKKINLKHALELDQMGMLERHFSKPPLKDTIAVPNNGY 725
            ...|.|      |.   :....|..|.:||.              :..|.|..:..||    |||
Zfish   540 AMFTVFDENKSWYQDENINTYCSDPKKVKKD--------------DPEFYKSNVMHTI----NGY 586

  Fly   726 VVIRFRADNPGYWLFHCHFLFHIVIGMNLIFHIGTTADLPPVPPRFPTCGDHVPPVTWY 784
            |.      ..|..|..||       |..:.:|:.:..:           .|::...|:|
Zfish   587 VY------ESGQELGFCH-------GEIVTWHVSSVGE-----------QDYIQTATFY 621

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stwNP_001137606.1 ascorbase 230..756 CDD:274555 112/614 (18%)
CuRO_1_tcLCC2_insect_like 230..333 CDD:259927 28/106 (26%)
CuRO_2_tcLCC_insect_like 352..500 CDD:259951 27/189 (14%)
CuRO_3_tcLLC2_insect_like 599..767 CDD:259972 39/196 (20%)
f5NP_001315460.1 CuRO_1_FV_like 28..187 CDD:259888 28/109 (26%)
CuRO_2_FV_like 199..323 CDD:259995 23/143 (16%)
CuRO_3_FV_like 345..522 CDD:259992 34/200 (17%)
CuRO_4_FV_like 535..678 CDD:259996 25/129 (19%)
COG5099 823..>1247 CDD:227430
PHA03151 1124..>1228 CDD:177546
Cupredoxin 1447..1620 CDD:302766
CuRO_6_FV_like 1629..1770 CDD:259997
FA58C 1775..1924 CDD:214572
FA58C 1778..1923 CDD:238014
FA58C 1928..2084 CDD:214572
FA58C 1932..2083 CDD:238014
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454773at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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