DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stw and Cp

DIOPT Version :9

Sequence 1:NP_001137606.1 Gene:stw / 35494 FlyBaseID:FBgn0286203 Length:784 Species:Drosophila melanogaster
Sequence 2:XP_006535444.1 Gene:Cp / 12870 MGIID:88476 Length:1086 Species:Mus musculus


Alignment Length:859 Identity:159/859 - (18%)
Similarity:259/859 - (30%) Gaps:297/859 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 NQPDLTPMGSFWQQHVA-------------TPSSSTPFDSPFFSATHG-----LVQTHPSIGGSH 91
            |:|  :|..:...:||.             .||.:..|.....:|...     ..|....||||:
Mouse   357 NKP--SPEDNIQDRHVRHYYIAAEEVIWNYAPSGTDIFTGENLTALESDSRVFFEQGATRIGGSY 419

  Fly    92 SGPA---PLNG---NSLGSGAPSSILAGTKPALTAGSG-----YLNSRGSLPTSARYPANKIT-- 143
            ...|   ..:|   |....|.....|....|.:.|..|     ..:::|..|.|.:......|  
Mouse   420 KKMAYREYTDGSFTNRKQRGPDEEHLGILGPVIWAEVGDTIKVTFHNKGQHPLSIQPMGVSFTAE 484

  Fly   144 --GTVVEPNPKSPFR---HL----DFSTSATAELRRNPALSAPDECARACREGEPPRICYYHFTL 199
              ||...|..:|..:   |:    .|:...|......|..:.|...::....|..|       |.
Mouse   485 NEGTYYGPPGRSSQQAASHVAPKETFTYEWTVPKEMGPTYADPVCLSKMYYSGVDP-------TK 542

  Fly   200 EYYTVLGAACQVCTPNATNTVWSHCQCVLADGVERGILTANRMIPGPSIQVCENDKVVID----- 259
            :.:|.|....::|...:          :||||.::.:.....:.|   ....||:.:::|     
Mouse   543 DIFTGLIGPMKICKKGS----------LLADGRQKDVDKEFYLFP---TVFDENESLLLDDNIRM 594

  Fly   260 -------VENHMEGMEVTIHWHGIWQRGSQYYDGVPFVTQCPIQQGNTFRYQWTGNAGTHFWHAH 317
                   |:...|..:.:...|.:   ....|...|.:..|   .|.:.           .|:..
Mouse   595 FTTAPDQVDKEDEDFQESNKMHSM---NGFMYGNQPGLNMC---LGESI-----------VWYLF 642

  Fly   318 TGLQKLD--GLYGSVVVRQPPSRDPNSHLYDFDLTTHIMLISDWLHEDAAERYPGRLAVNTGQDP 380
            :...:.|  |:|.|          .|::|            |.....|.|..:|.: ::....:|
Mouse   643 SAGNEADVHGIYFS----------GNTYL------------SKGERRDTANLFPHK-SLTLLMNP 684

  Fly   381 ESMLINGKGQF------RDPNTGFM--------TNTPLEIFTITPGRRYRFRMINAFASVCPAQV 431
            ::     ||.|      .|..||.|        .....|.||:..|.|..:          .|.|
Mouse   685 DT-----KGTFDVECLTTDHYTGGMKQKYTVNQCQRQFEDFTVYLGERTYY----------VAAV 734

  Fly   432 TIEGHGMTVIATDGEPVHPVDVNTIIS---------FSGERYDFVISADQPVGAYWIQLRGLGEC 487
            .:|.......|.:.|..|..:.|  :|         |.|.:|..|:.......::..|::     
Mouse   735 EVEWDYSPSRAWEKELHHLQEQN--VSNVFLDKEEFFIGSKYKKVVYRQFTDSSFREQVK----- 792

  Fly   488 GIRRA--QQLAIL-----------------RYARGPY---------QPASSPPTYDVGIPQGVIL 524
              |||  :.|.||                 ..|..||         :.::..||    :| |.:.
Mouse   793 --RRAEDEHLGILGPPIHANVGDKVKVVFKNMATRPYSIHAHGVKTESSTVVPT----LP-GEVR 850

  Fly   525 NPLDAICDRK---RADAVCV-----SNLKNAKKVDKG-----VLVERPDVKIFLP---FRFFVYE 573
            .....|.:|.   |.|:.|:     |.:...|.:..|     ::..:..||:|.|   ..||:. 
Mouse   851 TYTWQIPERSGAGREDSACIPWAYYSTVDRVKDLYSGLIGPLIVCRKSYVKVFSPKKKMEFFLL- 914

  Fly   574 PKALFIPNTYNRFLVVPSGDHLTSLVDEISYISPPAPPLSQIDDIPPEYFCNGDNRPPNCGPNCE 638
                        |||...        :|..|:.......|:    .||. .|.||          
Mouse   915 ------------FLVFDE--------NESWYLDDNIKTYSE----HPEK-VNKDN---------- 944

  Fly   639 CTHMVDIPLGAIVEVVLVDEVQQVNLSHPF------HLHGTA--------FYVVGLGRSPDKSIK 689
                              :|..:.|..|..      :|.|..        :||:|:|...|  :.
Mouse   945 ------------------EEFLESNKMHAINGKMFGNLQGLTMHVKDEVNWYVMGMGNEID--LH 989

  Fly   690 KINLK-HALELDQMGMLERHFSKPPLKDTIAVPNNGYVVIRFRADNPGYWLFHCHFLFHIVIGMN 753
            .::.. |:.:....|:..        .|...:....|..:......||.||.|||...|:..|| 
Mouse   990 TVHFHGHSFQYKHRGVYS--------SDVFDLFPGTYQTLEMFPQTPGTWLLHCHVTDHVHAGM- 1045

  Fly   754 LIFHIGTTADLPPV 767
                 .||..:.||
Mouse  1046 -----ATTYTVLPV 1054

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stwNP_001137606.1 ascorbase 230..756 CDD:274555 112/621 (18%)
CuRO_1_tcLCC2_insect_like 230..333 CDD:259927 18/116 (16%)
CuRO_2_tcLCC_insect_like 352..500 CDD:259951 36/189 (19%)
CuRO_3_tcLLC2_insect_like 599..767 CDD:259972 34/182 (19%)
CpXP_006535444.1 Cupredoxin 22..201 CDD:388514
CuRO_2_ceruloplasmin 213..353 CDD:259907
CuRO_3_ceruloplasmin 369..567 CDD:259886 42/214 (20%)
CuRO_4_ceruloplasmin 570..713 CDD:259908 30/190 (16%)
CuRO_5_ceruloplasmin 727..897 CDD:259887 35/193 (18%)
Cupredoxin 908..1052 CDD:388514 39/213 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454773at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R446
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.040

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