DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stw and f5

DIOPT Version :9

Sequence 1:NP_001137606.1 Gene:stw / 35494 FlyBaseID:FBgn0286203 Length:784 Species:Drosophila melanogaster
Sequence 2:XP_002935820.2 Gene:f5 / 100135376 XenbaseID:XB-GENE-987398 Length:2011 Species:Xenopus tropicalis


Alignment Length:512 Identity:105/512 - (20%)
Similarity:170/512 - (33%) Gaps:176/512 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 NTVWSHCQ--------CVLADGVERGILTA-NRMIPGPSIQVCENDKVVIDVENHMEGMEVTIHW 273
            ||...:||        ...:|.....:||| |..:.||.|:....|.:.:..:|..: ...:|:.
 Frog   370 NTDKINCQQKYKKVLYKAYSDNTFTKLLTAGNEGLLGPVIRAQVRDTITVVFKNKAK-RPYSIYP 433

  Fly   274 HGIWQRGSQYYDGVPFVTQCPIQQGNTFRYQ--WTGNAGTHFWHAHTGLQKLDGLYGSVVVRQPP 336
            ||:  ...:.|:|..:.   |..:||..:.|  ..|...|::|:    :.:.|         :|.
 Frog   434 HGV--SVQKAYEGASYP---PDIRGNETQNQAVMPGETVTYYWN----ILETD---------EPA 480

  Fly   337 SRDPN--SHLYDFDLTTHIMLISDWLHEDAAERYPGRLAVNTGQDPESMLINGKG---------- 389
            :|||.  :.:|...:.         :.:|.|....|.|.:     .:||.:|.:|          
 Frog   481 ARDPRCLTRMYHSAVN---------ITKDIASGLIGPLLI-----CKSMSLNTRGVQEKADLEQI 531

  Fly   390 ---QFRDPNTGF------------MTNTPLEIFT--ITPGRRYRFRMINAFA------SVCPAQV 431
               ...|.|..:            :.|...|.::  |.|       .||.:|      ..|.:||
 Frog   532 ATFALFDENKSWYHNENKLKHCHAVNNDQTEYYSHNIIP-------TINGYAFESAPLGFCHSQV 589

  Fly   432 TIEGHGMTVIATD---GEPVH-----------PVDVNTIISFSGERYDFVISADQPVGAYWIQLR 482
             |..|..:|.|.|   |  ||           ..|...|...|||.    ||.|......|:   
 Frog   590 -IHWHISSVGAQDEIIG--VHLSGHTLRYKGKSEDTVNIFPMSGES----ISVDMDNLGLWL--- 644

  Fly   483 GLGECGIRRAQQLAILRYA-------RGPYQP----------------ASSPPTYDVGIPQGVIL 524
             .|..|..:..|...:|:.       ...|:.                .:||.| |....:.|..
 Frog   645 -FGVFGSSKKNQGLKVRFTDVICVEEEEDYEEPNIQFGISSEEITKKIVTSPET-DYSEEEDVNT 707

  Fly   525 NPLDAICDRKRADAVCVSNLKNAKKV-DKGVLVERPDVKIFLPFRFFVYEPKALFIPNTYNR--- 585
            | ||.......||...:.:.:|..:. ::||.:                  .||.|.:||.|   
 Frog   708 N-LDIDYTDNLADLFHIRSFRNKTETQEEGVNL------------------TALAIEHTYGRQNE 753

  Fly   586 -------------FLVVPSGDHLTSLVDEISYISPPAPPLSQIDDIP--PEYFCNGD 627
                         :.:||..|:..|..:..|  :..|..|:: |.:|  |:|..:.|
 Frog   754 SMGDFSKLEVSEEYDIVPIEDNENSNFNPTS--ASKADKLTK-DGLPKTPQYMQSKD 807

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stwNP_001137606.1 ascorbase 230..756 CDD:274555 101/492 (21%)
CuRO_1_tcLCC2_insect_like 230..333 CDD:259927 23/105 (22%)
CuRO_2_tcLCC_insect_like 352..500 CDD:259951 40/194 (21%)
CuRO_3_tcLLC2_insect_like 599..767 CDD:259972 8/31 (26%)
f5XP_002935820.2 CuRO_1_FV_like 32..192 CDD:259888
CuRO_2_FV_like 204..326 CDD:259995
CuRO_3_FV_like 348..514 CDD:259992 36/176 (20%)
CuRO_4_FV_like 527..666 CDD:259996 33/156 (21%)
PTZ00112 775..>1084 CDD:240274 9/36 (25%)
235kDa-fam <938..>1249 CDD:130673
CuRO_5_FV_like 1368..1543 CDD:259993
CuRO_6_FV_like 1555..1694 CDD:259997
FA58C 1702..1849 CDD:238014
FA58C 1857..2008 CDD:238014
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I11920
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454773at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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