DRSC - DRSC Integrative Ortholog Prediction Tool

DRSC/TRiP Functional Genomics Resources

powered by:

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment COX4L and APOBEC3C

DIOPT Version :10

Sequence 1:	NP_610168.1	Gene:	COX4L / 35491	FlyBaseID:	FBgn0033020	Length:	176	Species:	Drosophila melanogaster
Sequence 2:	NP_055323.2	Gene:	APOBEC3C / 27350	HGNCID:	17353	Length:	190	Species:	Homo sapiens

Alignment Length:	36	Identity:	11/36 - (30%)
Similarity:	17/36 - (47%)	Gaps:	3/36 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly    44 RPIYFDSPDCPFPAIRYREVSPELCALREKELDDWK 79
            |..||..| |....:  |.:|.|..|:...:.:|:|
Human   122 RLYYFQYP-CYQEGL--RSLSQEGVAVEIMDYEDFK 154

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
COX4L	NP_610168.1	Cyt_c_Oxidase_IV	35..170	CDD:238462	11/36 (31%)
APOBEC3C	NP_055323.2	APOBEC2	12..190	CDD:465863	11/36 (31%)
APOBEC3C	NP_055323.2	(Microbial infection) Required for interaction with human foamy virus protein Bet. /evidence=ECO:0000269\|PubMed:19074429	40..86
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.