DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sxc and SEC

DIOPT Version :10

Sequence 1:NP_523620.1 Gene:sxc / 35486 FlyBaseID:FBgn0261403 Length:1059 Species:Drosophila melanogaster
Sequence 2:NP_187074.1 Gene:SEC / 819579 AraportID:AT3G04240 Length:977 Species:Arabidopsis thaliana


Alignment Length:1041 Identity:414/1041 - (39%)
Similarity:588/1041 - (56%) Gaps:110/1041 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 LDQNPNSTGSNLVVKQ-NDIQSLSSVGLLELAHREYQAVDYESAEKHCMQLWRQDSTNTGVLLLL 90
            ||.:.:|:.|:.:::| |..........|.|||:.|:..|::.|.:|...:::::...|..|||:
plant    29 LDLSVSSSSSSSLLQQFNKTHEGDDDARLALAHQLYKGGDFKQALEHSNMVYQRNPLRTDNLLLI 93

  Fly    91 SSIHFQCRRLDKSAQFSTLAIKQNPVLAEAYSNLGNVFKERGQLQEALDNYRRAVRLKPDFIDGY 155
            .:|::|.:..|.....:..|::..|..||.|.|:.|.:||:|....|:..|..|:.|:|:|.|.:
plant    94 GAIYYQLQEYDMCIARNEEALRIQPQFAECYGNMANAWKEKGDTDRAIRYYLIAIELRPNFADAW 158

  Fly   156 INLAAALVAARDMESAVQAYITALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETCPGFA 220
            .|||:|.:....:..|.|....||..||.|....|:||||:||.|.:.||.:|||:|:...|.||
plant   159 SNLASAYMRKGRLSEATQCCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTFA 223

  Fly   221 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSP 285
            :|||||..:|...|::..|:.::::||.|.|.|.|||:|||||.|.......|:..|..||.:.|
plant   224 IAWSNLAGLFMESGDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQMRP 288

  Fly   286 NNAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVKEAEDCYNTALR 350
            |:|:..||:|.:|||||.:||||..|::|:...|.|.:||.||.||||:.|:|.||..|||..|.
plant   289 NSAMAFGNIASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGRVDEAVRCYNQCLA 353

  Fly   351 LCSNHADSLNNLANIKREQGYIEEATRLYLKALEVFPDFAAAHSNLASVLQQQGKLKEALMHYKE 415
            |..||..::.||.||..|...:..|:.|:...|.|....:|..:|||.:.:|||...:|:..|.|
plant   354 LQPNHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSDAISCYNE 418

  Fly   416 AIRIQPTFADAYSNMGNTLKELQDVSGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQS 480
            .:||.|..|||..|.|||.||:..|:.|:|.|..||...|..|:||:||||.:||||::..||.|
plant   419 VLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHANLASAYKDSGHVEAAITS 483

  Fly   481 YRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDIRMKKLVSIVTEQLEKNRLPSVHPHHSMLYPLT 545
            |:.||.|:||||:|.|||.|.||.||.|.|......::.||:..|:..:.||||.|.|::.||:.
plant   484 YKQALLLRPDFPEATCNLLHTLQCVCCWEDRSKMFAEVESIIRRQINMSVLPSVQPFHAIAYPID 548

  Fly   546 HDCRKAIAARHANLCLEKVHVLHKKPYNFLKKLPTK-----GRLRIGYLSSDFGNHPTSHLMQSV 605
            ......|:.::|..|..........|:.....||.|     .||||||:||||||||.||||.||
plant   549 PILALEISRKYAAHCSIIASRFGLPPFTHPAGLPVKREGGFKRLRIGYVSSDFGNHPLSHLMGSV 613

  Fly   606 PGLHDRSKVEIFCYALSPDDGTTFRHKISRESENFVDLSQIPCNGKAADKIFN-DGIHILVNMNG 669
            .|:|:|..||:||||||.:|.|.:|.:|..|:|:|:|:|.:  :..|..||.| |.|.||:|:||
plant   614 FGMHNRENVEVFCYALSANDNTEWRQRIQSEAEHFLDVSAM--SSDAIAKIINQDKIQILINLNG 676

  Fly   670 YTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDSVTSPLELAYQYSEKLSYMPHTYFIG 734
            |||||||||||::||||||.::|:|||:||:::||::||...|||:.|:.|||||.::||.||:.
plant   677 YTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDEFVSPLQYAHIYSEKLVHLPHCYFVN 741

  Fly   735 DHKQMFPHLKERIIVCDKQQSSVVDNVTVINATDLSPLVENTDVKEIKEVVNAQKPVEITHKVAE 799
            |:||                                   :|.||.:                   
plant   742 DYKQ-----------------------------------KNQDVLD------------------- 752

  Fly   800 LPNTTQIVSMIATGQVQTSLNGVVVQNGLATTQTNNKAATGEEVPQNIVITTRRQYMLPDDAVVY 864
             ||:.                                       |:      |..|.||:|..::
plant   753 -PNSK---------------------------------------PK------RSDYGLPEDKFIF 771

  Fly   865 CNFNQLYKIDPQTLESWVEILKNVPKSVLWLLRFPAVGEQNIKKTVSDFGISPDRVIFSNVAAKE 929
            ..||||||:||:.:.:|..|||.||.|.||||||||.||...:...:..|:.||::||::||.|.
plant   772 ACFNQLYKMDPEIVNTWCNILKRVPNSALWLLRFPAAGEMRFRTYAAAQGVQPDQIIFTDVAMKS 836

  Fly   930 EHVRRGQLADICLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPE-LIARTR 993
            ||:||..|||:.|||||||||||..||||.|.|::|||.|.:|:|||.|.....|... :|..:.
plant   837 EHIRRSVLADVILDTPLCNGHTTGTDVLWAGVPMITLPLEKMATRVAGSLCLATGLGHGMIVNSL 901

  Fly   994 EEYQNIAIRLGTKKEYLKALRAKVWKARVESPLFDCSQYAKGLEKLFLRMWEKYENGELPDHISA 1058
            |||:..|:.|...|..|:||..::..:|:..||||..::.|.||:.:.:||..:.:|:.|.|...
plant   902 EEYEEKAVSLALNKPKLQALTKELRASRLTCPLFDTMRWVKNLERSYFKMWNLHCSGQQPQHFKV 966

  Fly  1059 V 1059
            :
plant   967 L 967

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sxcNP_523620.1 TPR repeat 53..78 CDD:276809 8/24 (33%)
TPR 80..318 CDD:440225 95/237 (40%)
TPR repeat 86..112 CDD:276809 7/25 (28%)
TPR repeat 118..146 CDD:276809 11/27 (41%)
TPR repeat 151..181 CDD:276809 10/29 (34%)
LapB 219..486 CDD:442196 120/266 (45%)
TPR repeat 220..248 CDD:276809 10/27 (37%)
TPR repeat 255..282 CDD:276809 12/26 (46%)
TPR repeat 287..317 CDD:276809 15/29 (52%)
TPR repeat 322..350 CDD:276809 15/27 (56%)
TPR repeat 355..385 CDD:276809 9/29 (31%)
TPR repeat 390..418 CDD:276809 10/27 (37%)
TPR repeat 423..453 CDD:276809 15/29 (52%)
TPR repeat 458..486 CDD:276809 16/27 (59%)
Glyco_transf_41 505..1036 CDD:404688 210/537 (39%)
SECNP_187074.1 CpoB 43..>104 CDD:441335 16/60 (27%)
TPR repeat 54..81 CDD:276809 8/26 (31%)
TPR repeat 90..115 CDD:276809 7/24 (29%)
LapB 91..355 CDD:442196 111/263 (42%)
TPR repeat 121..149 CDD:276809 11/27 (41%)
TPR repeat 154..184 CDD:276809 10/29 (34%)
TPR repeat 189..217 CDD:276809 14/27 (52%)
TPR repeat 223..251 CDD:276809 10/27 (37%)
Spy 257..956 CDD:443119 332/800 (42%)
TPR repeat 257..285 CDD:276809 12/27 (44%)
TPR repeat 290..320 CDD:276809 15/29 (52%)
TPR repeat 325..353 CDD:276809 15/27 (56%)
TPR repeat 359..383 CDD:276809 7/23 (30%)
TPR repeat 396..421 CDD:276809 9/24 (38%)
TPR repeat 426..456 CDD:276809 15/29 (52%)
TPR repeat 461..488 CDD:276809 15/26 (58%)

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