DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sxc and ttc13

DIOPT Version :9

Sequence 1:NP_523620.1 Gene:sxc / 35486 FlyBaseID:FBgn0261403 Length:1059 Species:Drosophila melanogaster
Sequence 2:XP_002934497.1 Gene:ttc13 / 733802 XenbaseID:XB-GENE-1001908 Length:839 Species:Xenopus tropicalis


Alignment Length:912 Identity:166/912 - (18%)
Similarity:308/912 - (33%) Gaps:330/912 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 DIQSLSSVGLLELAHREYQAVDYESAEKHCMQLWRQDSTNTGVLLLLSSIHFQCRRLD-----KS 103
            |:...|..|....|||:   ::.:||       |..:..:        |..|..|.||     ..
 Frog    42 DMNRQSGPGKGGCAHRD---LNSDSA-------WDAEDCD--------SAFFTFRELDCEPRGSP 88

  Fly   104 AQFSTLAIKQNPVLAEAYS--------------------NLGNVFKERGQLQEALDNYRRAVRLK 148
            |..|.:::....:|::|.|                    .:|.|....|...||:.::...::.:
 Frog    89 ACESIISLNTEKILSQAKSLAEQKRLPFITNDDDTNEELAIGYVLIGSGLQDEAIKHFSSMLQEE 153

  Fly   149 PDFIDGYI--NLAAALVAARDMESAVQAYI---TALQYNPDLYCVRSDLGNLLKALGRLEEAKAC 208
            ||.:....  .:|.|....:|:::|..|..   ..:...||...|......:|..|||:.||.:.
 Frog   154 PDLVSAIYGRGIAYARKGLQDIKNAELALFELSRVISLEPDHPEVFEQRAEILSPLGRISEALSD 218

  Fly   209 YLKAIETCPGFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 273
            ..:||:..|.        ..::..:|.:     ||     :..::|.|..:              
 Frog   219 LTRAIQLQPS--------ARLYRHRGTL-----HF-----ISEDYLAAQED-------------- 251

  Fly   274 VAAYLRALNLSPNN--AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPNFPDAYCNLANALKEKG 336
               :.|:|.|:.|.  ||::..|  .::.:||:..|||:::.|::.:.||.:||.:|..|.:|.|
 Frog   252 ---FQRSLGLNQNQPIAVLYKGL--TFFHRGLLKEAIDSFKEALKQKSNFIEAYKSLGQAYRELG 311

  Fly   337 QVKEAEDCYNTALRLCSNHADSLNNLANIKREQGYIEEATRLYLKALEVFPDFAAAHSNLASVLQ 401
            ..:.|.:.:..||.|..||..:|.                   |:.:               :|.
 Frog   312 NFEAAMENFQKALMLNQNHVQTLQ-------------------LRGM---------------MLY 342

  Fly   402 QQGKLKEALMHYKEAIRIQPTFADAYSNMGNTLKELQDVS-----GALQCYTRAIQINP------ 455
            ..|.|:|||.::|..::::|     |:.:...:|.|..||     ..::..|:.:..:|      
 Frog   343 HHGSLQEALTNFKRCLQLEP-----YNEVCQYMKGLSHVSMGHFYEGIKAQTKVMLNDPLPGQKA 402

  Fly   456 --------------AFADAH-----------SNLASIHKD--SGNIPEAIQSYRTALKLKPDFPD 493
                          .:..||           ::|....||  :.|:|..|:.|.....|:|...|
 Frog   403 SQEYLKVKYLREYSRYLHAHLDTPVTEYNIDADLPGNFKDHWAKNLPFLIEDYEEQPGLQPHIKD 467

  Fly   494 AYCNLAHCLQIVCDWTDYDIRMKKLVSIVTE-----QLEK-NRLPSVHPHHSMLYPLTHDCRKAI 552
            .         :..::..|...:::||.:...     |.|. ..||:...|.:|          .:
 Frog   468 V---------LPQNFESYKPEIQELVCVADSLGSLMQYETYGFLPNRRIHRAM----------GL 513

  Fly   553 AARHANLCLEKVHVLHKKPYNFLKKLPTKGRLRIGYLSSDFGNHPTSHLMQSVPGLHDRSKVEIF 617
            ||      ||.:..||:...|  .|:...|:.|               |||         ..::|
 Frog   514 AA------LEIMQALHRTWTN--SKVRINGKTR---------------LMQ---------WRDMF 546

  Fly   618 CYALSPDDGTTFRHKISRESENFVDLSQIPCNGKAADKIFNDGIHILVNMNGYTKGARNEIFALR 682
                  |....:| :||...:..:.|.|:|  .::..:.||:.|:::          |.:|..:|
 Frog   547 ------DIAVKWR-RISDPDQPVLWLDQMP--AQSLIRGFNNHINLI----------RGQIINMR 592

  Fly   683 PAPIQVMWLGYPGTSGASFMDYIITDSVTSPLELAYQYSEKLSYMPHTYFIGDHKQMFPHLKERI 747
                              ::||..|                               :...:|:||
 Frog   593 ------------------YLDYFDT-------------------------------ILGFIKDRI 608

  Fly   748 IVCDKQQSSVVDNVTVINATDLSPLVENTDVKEIKEVVNAQKPVEITHKVAELPNTTQIVSMIAT 812
            ::.....:.                   ..:.|:||.:...|.||....:.:|.:.|:       
 Frog   609 LIYHSANNP-------------------RGLLEVKEALEKVKKVEDLLPIMKLNSKTR------- 647

  Fly   813 GQVQTSLNGVVVQNGLATTQTNNK-------AATGEEVPQNIVITTRRQYMLPDDAVVYCNFNQL 870
                   :|..|...:.:.:...|       ..||::| .||:.:...|.......:.:.....|
 Frog   648 -------DGFTVNTKVPSLKDERKEYDGFTITITGDKV-GNILFSVETQTTEERTQLYHAEIEAL 704

  Fly   871 YK 872
            ||
 Frog   705 YK 706

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sxcNP_523620.1 TPR repeat 53..78 CDD:276809 5/24 (21%)
TPR_11 86..149 CDD:290150 15/87 (17%)
TPR repeat 86..112 CDD:276809 7/30 (23%)
TPR_11 118..183 CDD:290150 14/89 (16%)
TPR_1 118..151 CDD:278916 8/52 (15%)
TPR repeat 118..146 CDD:276809 7/47 (15%)
TPR repeat 151..181 CDD:276809 5/34 (15%)
TPR_12 182..252 CDD:290160 15/69 (22%)
TPR_1 192..219 CDD:278916 9/26 (35%)
TPR_1 220..253 CDD:278916 3/32 (9%)
TPR repeat 220..248 CDD:276809 3/27 (11%)
TPR 233..490 CDD:223533 59/296 (20%)
TPR_1 255..287 CDD:278916 4/31 (13%)
TPR repeat 255..282 CDD:276809 2/26 (8%)
TPR repeat 287..317 CDD:276809 9/31 (29%)
TPR_1 288..321 CDD:278916 9/32 (28%)
TPR_17 310..342 CDD:290167 9/31 (29%)
TPR repeat 322..350 CDD:276809 8/27 (30%)
TPR repeat 355..385 CDD:276809 3/29 (10%)
TPR_10 356..>385 CDD:290111 2/28 (7%)
TPR_1 390..423 CDD:278916 8/32 (25%)
TPR repeat 390..418 CDD:276809 7/27 (26%)
TPR repeat 423..453 CDD:276809 6/34 (18%)
TPR_1 424..455 CDD:278916 6/35 (17%)
TPR_1 458..491 CDD:278916 11/45 (24%)
TPR repeat 458..486 CDD:276809 9/40 (23%)
Glyco_transf_41 584..1044 CDD:290556 44/296 (15%)
ttc13XP_002934497.1 PEP_TPR_lipo 127..>398 CDD:274350 73/346 (21%)
TPR repeat 127..151 CDD:276809 5/23 (22%)
TPR repeat 159..190 CDD:276809 5/30 (17%)
TPR repeat 196..224 CDD:276809 8/27 (30%)
TPR repeat 229..257 CDD:276809 6/54 (11%)
TPR repeat 263..291 CDD:276809 9/29 (31%)
TPR repeat 296..326 CDD:276809 10/29 (34%)
TPR repeat 331..359 CDD:276809 9/61 (15%)
TPR repeat 365..392 CDD:276809 5/26 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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