DRSC/TRiP Functional Genomics Resources

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Protein Alignment sxc and gtf3c3

DIOPT Version :10

Sequence 1:NP_523620.1 Gene:sxc / 35486 FlyBaseID:FBgn0261403 Length:1059 Species:Drosophila melanogaster
Sequence 2:NP_001243171.1 Gene:gtf3c3 / 553318 ZFINID:ZDB-GENE-040914-80 Length:918 Species:Danio rerio


Alignment Length:910 Identity:176/910 - (19%)
Similarity:293/910 - (32%) Gaps:387/910 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 GLLELAHREYQAVDYESAEKHCMQLWRQDSTNTGVLLLLSSIHFQCRRLDKSAQFSTLAIKQNPV 116
            ||:..|:..|...|.|.|...||::.||..........::.|:.....::|:.||..:|...||.
Zfish   171 GLMGEANIRYARGDKEDAILMCMEIIRQAPVAYEPFSTMAMIYEDQGDMEKALQFGLIAAHLNPS 235

  Fly   117 LAEAYSNL----------------------------------GNVFKERGQLQEALDNYRRAVRL 147
            ..|.:..|                                  .:::::.|:.::|:|.|||.:.|
Zfish   236 DCEEWVKLADMSLEQDNIKQAIICYTKAIKYDSSNVQYLWERSSLYEQVGEHKQAMDGYRRILSL 300

  Fly   148 KPDFIDG--YINLAAALVAARDMESAVQAYITALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 210
            .|. .||  ::.|      :|||..:              |...|:|.:   |:|.:||      
Zfish   301 LPP-TDGEHFMQL------SRDMAKS--------------YYESSELPS---AIGVMEE------ 335

  Fly   211 KAIETCPGFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL-GNVLK-----EARI 269
             |:|..|.....    .|| |...|:::|.|..:||       |:|.:.. |.|||     |.::
Zfish   336 -ALERHPELVTH----ECV-NMAAELFIANHQHDKA-------LEALVKFCGIVLKRQEKVETKL 387

  Fly   270 FDR----------------------------AVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDL 306
            .::                            ||...:||           ..:.|:.::|  :..
Zfish   388 EEQTLTQDTEEDTKEDTEEEKGKVIEVVIPDAVPIDIRA-----------KMMVCLIHQQ--VFK 439

  Fly   307 AIDTYRRAI-ELQP-NFPDAYCNLANALKEKGQVKEAEDCYNTALRL-----CS----------N 354
            .:|....:: |..| ...|.|.::|.|..|:|:       ||:||.|     ||          .
Zfish   440 PLDPMLTSLMEQSPEELGDLYLDVAEAFMEEGE-------YNSALPLLSALVCSERYNLAVVWLR 497

  Fly   355 HADSLNNLANIKREQGYIEEATRLYLKALEVFPDFAAAHSNLASVLQQQGKLKEAL-----MHYK 414
            ||:.|..|       |::|.|.:.|.|.:|:.|....|...|:::.||.|:...||     |:..
Zfish   498 HAECLKAL-------GHLEVAVKSYSKVVEMAPLHLEARLALSTLQQQLGRPNMALEALEPMYDA 555

  Fly   415 EAIRIQPTFA--------------------DAY------------------------SNMGNTLK 435
            |.:....:.|                    |.|                        ::|.:.:|
Zfish   556 ETLAQDSSAAQQELKLLLHRSTLLLSQGRMDDYIDTVLTMLSMFLKVAMVRAQVCVVADMSSGVK 620

  Fly   436 ELQDVSGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAH 500
            .|:.:..:....|..:....|:.|.....:.:.||..        ::.:|:              
Zfish   621 HLKLIKVSRSALTEIVDQEAAYLDVTGKTSVLSKDDW--------WKLSLR-------------- 663

  Fly   501 CLQIVCD-----------------WTDYDIRMKKLVSIVTEQLEKNRLPSVHPHHSMLYPLTHDC 548
            ||.::|:                 ::.||.|:|:      ::||...|.:..        |.|:.
Zfish   664 CLSVLCEEKRFAEAELLVDSTLEYYSFYDDRVKR------KELEYLGLSAAF--------LDHNF 714

  Fly   549 RKAI----------------------------AARHANLCLEKVHVLHKKPYNFLKKLPTKGRLR 585
            |.|.                            .|||...||                     ||.
Zfish   715 RTAYNYIRLMLMDSVERPQLWNVFNQITLHSQDARHHRFCL---------------------RLM 758

  Fly   586 IGYLSSDFGNHPTSHLMQSVPGLHDRSKVEIFCYAL---------SPDD-------GTTF----- 629
            :        .||.:|.:..:.| |.......|.:||         .||.       |.||     
Zfish   759 L--------KHPDNHALYLLNG-HTSLVSGTFKHALGQYMQAFRNEPDHPLHSLAIGLTFFHMAC 814

  Fly   630 ------RHKISRESENF----VDLSQIPCNGKAADKIFNDG--IHIL----VNMNGYTKGARNEI 678
                  ||.::.:..:|    |||     .|:..:.::|.|  :|.|    :.::.|.|      
Zfish   815 QKFVMKRHSLTVQGFSFLWRYVDL-----RGQCQESLYNLGRALHQLGLTHLAIHYYEK------ 868

  Fly   679 FALRPAPIQVMWLGYPGTSGASFMDYIITDSVTSPLELAYQYSEKLSYMPHTYFIGDHKQMFPHL 743
             ||...|::              |:.|..|.|....|:||..|  |.|..     ..:|.|..|:
Zfish   869 -ALTLPPLK--------------MEGIEDDQVDLRREIAYNLS--LIYQS-----SGNKDMARHI 911

  Fly   744  743
            Zfish   912  911

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sxcNP_523620.1 TPR repeat 53..78 CDD:276809 8/24 (33%)
TPR 80..318 CDD:440225 56/308 (18%)
TPR repeat 86..112 CDD:276809 5/25 (20%)
TPR repeat 118..146 CDD:276809 8/61 (13%)
TPR repeat 151..181 CDD:276809 6/31 (19%)
LapB 219..486 CDD:442196 68/366 (19%)
TPR repeat 220..248 CDD:276809 8/27 (30%)
TPR repeat 255..282 CDD:276809 10/60 (17%)
TPR repeat 287..317 CDD:276809 3/30 (10%)
TPR repeat 322..350 CDD:276809 9/27 (33%)
TPR repeat 355..385 CDD:276809 9/29 (31%)
TPR repeat 390..418 CDD:276809 9/32 (28%)
TPR repeat 423..453 CDD:276809 7/73 (10%)
TPR repeat 458..486 CDD:276809 3/27 (11%)
Glyco_transf_41 505..1036 CDD:404688 61/321 (19%)
gtf3c3NP_001243171.1 LapB <166..371 CDD:442196 54/242 (22%)
TPR repeat 172..197 CDD:276809 8/24 (33%)
TPR repeat 203..231 CDD:276809 5/27 (19%)
TPR repeat 236..266 CDD:276809 2/29 (7%)
TPR repeat 271..299 CDD:276809 6/27 (22%)
TPR repeat 310..338 CDD:276809 12/57 (21%)
Spy 450..>550 CDD:443119 33/113 (29%)
TPR repeat 458..485 CDD:276809 11/33 (33%)
TPR repeat 490..521 CDD:276809 9/37 (24%)
TPR repeat 526..550 CDD:276809 7/23 (30%)
Spy 699..>874 CDD:443119 42/224 (19%)
TPR repeat 842..872 CDD:276809 8/36 (22%)
PRK02603 <862..>908 CDD:179448 16/73 (22%)

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