DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment d4 and dpf3

DIOPT Version :9

Sequence 1:NP_610163.1 Gene:d4 / 35485 FlyBaseID:FBgn0033015 Length:497 Species:Drosophila melanogaster
Sequence 2:NP_001104639.1 Gene:dpf3 / 562738 ZFINID:ZDB-GENE-041014-190 Length:391 Species:Danio rerio


Alignment Length:496 Identity:169/496 - (34%)
Similarity:228/496 - (45%) Gaps:150/496 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 IQNFLN--DKEKYKEILENSENFNTRLCIERRLRMPFLDPQTGVAQTHCSLFMKKKQRMPGLRHG 83
            |||.|.  ..:.|:|.:|:..::|.|||.||.:||||||.||||||.:|.::|:|:.|.||:..|
Zfish     5 IQNPLKALGDQFYREAIEHCRSYNARLCAERSVRMPFLDSQTGVAQNNCYIWMEKRHRGPGMAAG 69

  Fly    84 QIYTYPSSRWRKPKRQYL-LNPNQSFRAYQYREHNLQHSHHQTHQHHHHIPSSGVAVPQNPHLAE 147
            |:||||:..|||.:|.:. |:|       |.|...|:            :.:..:|..:.|....
Zfish    70 QMYTYPARCWRKKRRLHTPLDP-------QLRLCELR------------LEAELMAKREAPQTEA 115

  Fly   148 SAAIAATDGNSMGASGDNDSKDSHANVEKEWFHDEMDTSHFHHGDEFEDDFDSDNDFDESYTSRG 212
            :|..|...|:.:....:|::|:....:|         .......||..|.|..|.||:       
Zfish   116 TALEALLRGDGILDKRNNNAKEEETLLE---------IQRVLEADENGDGFHDDEDFE------- 164

  Fly   213 KRKKCSRPRRTNANVEGTPKRGR-KGGGNRRKNAVEGES-------DRKRRAGGNSANTSAAAAA 269
                ...|:|.:.|      :|| :|.|.||..||..:.       |.:.:...||         
Zfish   165 ----VDTPKRKHRN------KGRGRGSGRRRTEAVANDDQDKPYVCDNRYKQKHNS--------- 210

  Fly   270 AAAAVAHAACTAAAVASTGL--YASHSNSA--------------SPIPINDDNSQSGLILPTNIS 318
               ..|.:.|........||  :.:|::.|              || |::.:|            
Zfish   211 ---KTADSVCGKRYKNRPGLSYHYAHTHLAEEEGEEERETEIPQSP-PVHHEN------------ 259

  Fly   319 SSYDKTSSDAGASNDSIPLATMVAINAGLTTSNVCNAHPVQTGTNQTVFATGNKVKQRVERDIAQ 383
                                                 |..|...:.::.                
Zfish   260 -------------------------------------HKPQKAPDGSII---------------- 271

  Fly   384 PSPYCDFCLGDQRENKKTNMPEELVSCSDCGRSGHPSCLQFTANMIISVKRYRWQCIECKYCSIC 448
            |:.||||||||...|:||...|||||||||||||||||||||.||:.:|:.|:|||||||.||:|
Zfish   272 PNDYCDFCLGDSGSNRKTGQAEELVSCSDCGRSGHPSCLQFTDNMMQAVRTYQWQCIECKSCSLC 336

  Fly   449 GTSDNDDQLLFCDDCDRGYHMYCLSPPLVTPPEGSWSCKLC 489
            |||:||||||||||||||||||||.||:..||||||||.||
Zfish   337 GTSENDDQLLFCDDCDRGYHMYCLKPPMTQPPEGSWSCHLC 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
d4NP_610163.1 Requiem_N 30..98 CDD:290758 36/67 (54%)
PHD1_d4 387..442 CDD:277091 40/54 (74%)
PHD2_d4 444..489 CDD:277005 36/44 (82%)
dpf3NP_001104639.1 Requiem_N 13..84 CDD:290758 36/70 (51%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 152..200 17/64 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 236..266 7/79 (9%)
PHD1_DPF2_like 275..330 CDD:277161 40/54 (74%)
PHD2_d4 332..377 CDD:277005 36/44 (82%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592125
Domainoid 1 1.000 134 1.000 Domainoid score I4964
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 299 1.000 Inparanoid score I2677
OMA 1 1.010 - - QHG49768
OrthoDB 1 1.010 - - D312433at33208
OrthoFinder 1 1.000 - - FOG0001297
OrthoInspector 1 1.000 - - otm26385
orthoMCL 1 0.900 - - OOG6_105541
Panther 1 1.100 - - LDO PTHR10615
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5121
SonicParanoid 1 1.000 - - X895
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1413.940

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