DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment d4 and Dpf1

DIOPT Version :9

Sequence 1:NP_610163.1 Gene:d4 / 35485 FlyBaseID:FBgn0033015 Length:497 Species:Drosophila melanogaster
Sequence 2:XP_038944303.1 Gene:Dpf1 / 50545 RGDID:61868 Length:455 Species:Rattus norvegicus


Alignment Length:537 Identity:167/537 - (31%)
Similarity:217/537 - (40%) Gaps:206/537 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 IQNFLND--KEKYKEILENSENFNTRLCIERRLRMPFLDPQTGVAQTHCSLFMKKKQRMPGLRHG 83
            |||.|..  ::.|:|.:|:..::|.|||.||.||:||||.||||||.:|.::|:|..|.|||..|
  Rat    44 IQNPLKSLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPG 108

  Fly    84 QIYTYPSSRWRKPKRQYLLNPNQSFRAYQYR----------------------------EHNLQH 120
            ||||||:..|||.:|..:|. :...|..:|:                            |..::.
  Rat   109 QIYTYPARCWRKKRRLNILE-DPRLRPCEYKIDCEAPLKKEGGLPEGPVLEALLCAETGEKKVEL 172

  Fly   121 SHHQTHQHHHHIPSSGVAVPQNPHLAESAAIAATDGNSMGASGDNDSKDSHANVEKEWFHDEMDT 185
            ...:|.....||.:.....||:|.                                 ::..:...
  Rat   173 KEEETIMDCQHISAPTFLTPQSPF---------------------------------YWAQKQQL 204

  Fly   186 SHFHHGDEFEDDFDSDNDFDESYTSRGKRKKCS-------RPRRTNANVEGTPKR------GRKG 237
            ..|.|..|.|       |.:|....|..|.|..       |.|:.||::|...|.      |:  
  Rat   205 LEFPHDLEVE-------DLEEDIPRRKNRAKGKAYGIGGLRKRQDNASLEDRDKPYVCDICGK-- 260

  Fly   238 GGNRRKN--------------AVEGESDRKRRAGGNSANTSAAAAAAAAAVAHAACTAAAVASTG 288
               |.||              ..|||...:|.|                                
  Rat   261 ---RYKNRPGLSYHYTHTHLAEEEGEEHTERHA-------------------------------- 290

  Fly   289 LYASHSNSASPIPINDDNSQSGLILPTNISSSYDKTSSDAGASNDSIPLATMVAINAGLTTSNVC 353
                       :|.:..|         |....|.:.:        .:|.|.              
  Rat   291 -----------LPFHRKN---------NHKQFYKELA--------WVPEAQ-------------- 313

  Fly   354 NAHPVQTGTNQTVFATGNKVKQRVERDIAQPSPYCDFCLGDQRENKKTNMPEELVSCSDCGRSGH 418
            ..|..:...:.||.                |:.|||||||.   :|||..||:|:||:|||||||
  Rat   314 RKHTAKKAPDGTVI----------------PNGYCDFCLGG---SKKTGCPEDLISCADCGRSGH 359

  Fly   419 PSCLQFTANMIISVKRYRWQCIECKYCSICGTSDND----------DQLLFCDDCDRGYHMYCLS 473
            |||||||.||..:|:.|||||||||.||:||||:||          |||||||||||||||||||
  Rat   360 PSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDGASWAGLTPQDQLLFCDDCDRGYHMYCLS 424

  Fly   474 PPLVTPPEGSWSCKLCM 490
            ||:..||||||||.||:
  Rat   425 PPMAEPPEGSWSCHLCL 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
d4NP_610163.1 Requiem_N 30..98 CDD:290758 38/67 (57%)
PHD1_d4 387..442 CDD:277091 38/54 (70%)
PHD2_d4 444..489 CDD:277005 37/54 (69%)
Dpf1XP_038944303.1 Requiem_N 52..118 CDD:404861 35/65 (54%)
SFP1 <249..277 CDD:227516 5/32 (16%)
PHD1_DPF1 327..384 CDD:277160 40/75 (53%)
PHD2_d4 385..440 CDD:277005 37/54 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350412
Domainoid 1 1.000 94 1.000 Domainoid score I7293
eggNOG 1 0.900 - - E1_KOG1244
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 278 1.000 Inparanoid score I2850
OMA 1 1.010 - - QHG49768
OrthoDB 1 1.010 - - D312433at33208
OrthoFinder 1 1.000 - - FOG0001297
OrthoInspector 1 1.000 - - otm44713
orthoMCL 1 0.900 - - OOG6_105541
Panther 1 1.100 - - O PTHR10615
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X895
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.860

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