DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment d4 and dpf2

DIOPT Version :9

Sequence 1:NP_610163.1 Gene:d4 / 35485 FlyBaseID:FBgn0033015 Length:497 Species:Drosophila melanogaster
Sequence 2:XP_005165359.1 Gene:dpf2 / 474324 ZFINID:ZDB-GENE-041024-2 Length:414 Species:Danio rerio


Alignment Length:509 Identity:176/509 - (34%)
Similarity:236/509 - (46%) Gaps:155/509 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 EKIQNFLNDKEKYKEILENSENFNTRLCIERRLRMPFLDPQTGVAQTHCSLFMKKKQRMPGLRHG 83
            |.:...|.: :.|::.||...|:|.|||.||.:||||||.||||||::|..:|:|:.|.||:..|
Zfish     6 ENVVQLLGE-QYYRDALEQCHNYNARLCAERSVRMPFLDSQTGVAQSNCYFWMEKRHRGPGVAPG 69

  Fly    84 QIYTYPSSRWRKPKRQYLL-NPNQSFRAYQYREHNLQHSHHQTHQHHHHIPSSGVAVPQNPHLAE 147
            |:||||:.||||.:|.:.. :|..||                        ||    :.....|..
Zfish    70 QLYTYPARRWRKKRRAHPPDDPRLSF------------------------PS----LKTELDLGI 106

  Fly   148 SAAIAATDGNSMGASGDNDSKDSHANVEKEWFHDEMDTSHFHHG---------------DEFEDD 197
            ...:.::||:|:.|....:..|..:.:|.....:|..::.|..|               |:|.||
Zfish   107 KKDVFSSDGSSLEALLKGEPVDKRSGLELRTTEEEPSSTEFSTGGLNSSSRVRKRILEPDDFLDD 171

  Fly   198 FDSDNDFDESYTSRGKRKKCSRPRRTNANVEGTPKRGRKGGGNRRKNAVEGESDRKRRAGGNSAN 262
            .| |.|::|.                      |||:..||.|..|              |.:||.
Zfish   172 LD-DEDYEED----------------------TPKKRGKGKGKGR--------------GVSSAR 199

  Fly   263 TSAAAAAAAAAVAHAACTAAAVASTGLYASHSNSASPIPINDDNSQSGLILPTNISSSYDKTSSD 327
            ....||||.                      .:...|...::...|.      :||.|.::.   
Zfish   200 KKLEAAAAL----------------------EDRDRPYACDNTFKQK------HISKSSERV--- 233

  Fly   328 AGASNDSIPLATMVAINAGLTTSNVCNAHPVQTGTNQTVFATGNKVKQRVERDIAQPSP------ 386
            .|....:.|         || :.:..::|..:           .:.:::.|.||.:|:|      
Zfish   234 CGKRYKNRP---------GL-SYHYAHSHLAE-----------EEGEEKDEMDIREPTPPRQDEP 277

  Fly   387 ---------------YCDFCLGDQRENKKTNMPEELVSCSDCGRSGHPSCLQFTANMIISVKRYR 436
                           ||||||||...|:||...|||||||||||||||||||||..|:.:||.||
Zfish   278 KTPKKGPDGLALPNNYCDFCLGDSSLNQKTGQSEELVSCSDCGRSGHPSCLQFTPIMMAAVKTYR 342

  Fly   437 WQCIECKYCSICGTSDNDDQLLFCDDCDRGYHMYCLSPPLVTPPEGSWSCKLCM 490
            |||||||.|:|||||:|||||||||||||||||||||||:..||||||||.||:
Zfish   343 WQCIECKCCNICGTSENDDQLLFCDDCDRGYHMYCLSPPMSVPPEGSWSCHLCL 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
d4NP_610163.1 Requiem_N 30..98 CDD:290758 38/67 (57%)
PHD1_d4 387..442 CDD:277091 41/54 (76%)
PHD2_d4 444..489 CDD:277005 37/44 (84%)
dpf2XP_005165359.1 Requiem_N 13..77 CDD:290758 34/64 (53%)
PHD1_DPF2_like 293..348 CDD:277161 41/54 (76%)
PHD2_d4 350..395 CDD:277005 37/44 (84%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592115
Domainoid 1 1.000 134 1.000 Domainoid score I4964
eggNOG 1 0.900 - - E1_KOG1244
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 299 1.000 Inparanoid score I2677
OMA 1 1.010 - - QHG49768
OrthoDB 1 1.010 - - D312433at33208
OrthoFinder 1 1.000 - - FOG0001297
OrthoInspector 1 1.000 - - otm26385
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10615
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5121
SonicParanoid 1 1.000 - - X895
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.990

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