DRSC/TRiP Functional Genomics Resources

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Protein Alignment d4 and rsf1b.1

DIOPT Version :10

Sequence 1:NP_610163.1 Gene:d4 / 35485 FlyBaseID:FBgn0033015 Length:497 Species:Drosophila melanogaster
Sequence 2:XP_017213569.2 Gene:rsf1b.1 / 327618 ZFINID:ZDB-GENE-030131-5829 Length:2046 Species:Danio rerio


Alignment Length:502 Identity:103/502 - (20%)
Similarity:163/502 - (32%) Gaps:146/502 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 SFRAYQYREHNLQHSH-------HQTHQHHHHIPSSGVAVPQNPHLAESAAIAATDGNSMGA--- 161
            |.::.:.||....||.       .:|..|..:......   |.|.::|...: .|.|.|:|:   
Zfish  1089 SLKSVETREIIKPHSDTEKPENAEKTKLHESNTEKEST---QKPCISEGDKL-LTRGESIGSKPC 1149

  Fly   162 -SGDN--DSKDSHANVEKEWFHDEMDTSHFHHGD----EFEDDFDSDNDFDESYTSRGKRK---- 215
             ..||  |.|...:...|    ...||:.....|    |.....|::|..|.:.|::..:.    
Zfish  1150 EDTDNPQDKKQEKSGSSK----SRTDTNKSSVSDSKKSETRKKVDAENKCDAAETAKSDKSEIAE 1210

  Fly   216 ---KCSRPRRTNANVEGTPKRGRKGGGNRRK--NAVEGESDRKRRAGGNSANTSAAAAAAAAAVA 275
               |.|...:|:..|: .|::..|......|  |.:|.:|:..:.|   ...|..:...|.|.|.
Zfish  1211 DKDKKSESTKTSDEVK-APEKPNKSDKEHEKQPNPMETDSEIPKTA---EETTKESVKEANAPVD 1271

  Fly   276 HAACTAAAVASTGLYASHSNSASPIPINDDNSQSGLILP------TNISSSYDKT---SSDAGAS 331
            ::....:...:|    |....||.:.   .....|:..|      :..|.:.|||   ..|.|..
Zfish  1272 NSTSKQSERDAT----SEEREASGVV---QEKGKGIKKPGRPSKKSTESQNKDKTVEEEKDDGKR 1329

  Fly   332 NDSIPL---------------ATMVAINAGLTTSNVC------------NAHPVQTGTNQTVFAT 369
            ....||               ..:...:...||...|            .|..:|....:...||
Zfish  1330 RGRTPLKLKKPAHRRKAEIQREELKGDSESETTDGRCLRRSPRICRPTAKAVEIQDKRAERKQAT 1394

  Fly   370 GNKVKQR---------VERDI--AQPSPYCDFCLG-------------------DQRENKKTNMP 404
            ..|.|:.         |:|.:  |:|.......:|                   |:.:.:::...
Zfish  1395 PEKEKEEEEEEEEEEPVQRKLRKAEPDGQTKPKVGRRRKRQPWSRMRRKKKSSEDEEDEEESESE 1459

  Fly   405 EELVSCSDCGRSGHPSCLQFTANMIISVKRYRWQCIE--------------------CKYCSICG 449
            ||.....|....         ..:..|.||.|.:..|                    ||:   ||
Zfish  1460 EEETEEDDSDED---------YKVEKSKKRRRNRNRERRSSDSSTSSSEDDTPNDDPCKH---CG 1512

  Fly   450 TSDNDDQLLFCDDCDRGYHMYCLSPPLVTPPEGSWSCKLCMEEFHKI 496
            ..::.:.:|.||.||.|||..||.|||:..|:|.|.|..|.   ||:
Zfish  1513 LPNHPELILLCDSCDSGYHTACLRPPLMIIPDGEWFCPPCQ---HKL 1556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
d4NP_610163.1 DPF1-3_N 31..93 CDD:464074
PHD1_d4 387..442 CDD:277091 10/93 (11%)
PHD2_d4 444..489 CDD:277005 19/44 (43%)
rsf1b.1XP_017213569.2 None
Blue background indicates that the domain is not in the aligned region.

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