DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nipped-A and PRKDC

DIOPT Version :9

Sequence 1:NP_001097192.2 Gene:Nipped-A / 35483 FlyBaseID:FBgn0053554 Length:3790 Species:Drosophila melanogaster
Sequence 2:NP_008835.5 Gene:PRKDC / 5591 HGNCID:9413 Length:4128 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nipped-ANP_001097192.2 FRB_dom <2568..3790 CDD:331513
FAT 2767..3102 CDD:308074
PIKK_TRRAP 3425..3712 CDD:270707
PRKDCNP_008835.5 HEAT 1 288..323
HEAT 2 1004..1040
Interaction with C1D. /evidence=ECO:0000269|PubMed:9679063 1503..1538
Leucine-zipper 1503..1538
TPR 1 1723..1756
NUC194 1816..2202 CDD:400469
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2050..2073
KIP-binding 2436..3212
FAT 3023..3470 CDD:396714
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3200..3222
PIKKc_DNA-PK 3719..4015 CDD:270716
FATC 4097..4128 CDD:396715
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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