DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nipped-A and smg1

DIOPT Version :9

Sequence 1:NP_001097192.2 Gene:Nipped-A / 35483 FlyBaseID:FBgn0053554 Length:3790 Species:Drosophila melanogaster
Sequence 2:XP_002932267.3 Gene:smg1 / 100145499 XenbaseID:XB-GENE-489705 Length:3653 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nipped-ANP_001097192.2 FRB_dom <2568..3790 CDD:331513
FAT 2767..3102 CDD:308074
PIKK_TRRAP 3425..3712 CDD:270707
smg1XP_002932267.3 DUF5303 28..134 CDD:407346
SMG1 625..1235 CDD:406268
PIKKc_SMG1 2113..2418 CDD:270714
FATC 3623..3652 CDD:396715
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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