DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gus and spsb4b

DIOPT Version :9

Sequence 1:NP_001246140.1 Gene:gus / 35478 FlyBaseID:FBgn0026238 Length:279 Species:Drosophila melanogaster
Sequence 2:NP_001003474.1 Gene:spsb4b / 445080 ZFINID:ZDB-GENE-040801-213 Length:281 Species:Danio rerio


Alignment Length:282 Identity:162/282 - (57%)
Similarity:208/282 - (73%) Gaps:7/282 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGQKISGGVKTVSRND-SQSTFKPIIPRELQADFVKPARIDILLDMPPASRDLQLKHSWNSEDRS 64
            |||::||.||:....: .:..:.|:...........|||:::|||||||..:.||:|:||.:|||
Zfish     1 MGQRVSGVVKSADEQEVGELAYPPVCAALRNRGVPLPARLELLLDMPPAGSEAQLQHAWNPDDRS 65

  Fly    65 LNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSV 129
            .|:|:|:||:||||||||||||||:|||.|.|:|||.|.:.||.|||||||||||.|:.|.|.:|
Zfish    66 PNLFIKDDDRLTFHRHPVAQSTDCVRGKTGFTRGLHAWSLRWPVRQRGTHAVVGVATSLATLRAV 130

  Fly   130 GYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVT--YPAILKNDE---AFLVPDKFLVALDMDEGT 189
            ||.:||||..:||||||||.:||||.|:.:|..  ||..:::::   .|.||::.||.|||||||
Zfish   131 GYSALVGSDAESWGWDLGRGRLYHDRKSRSGPAPPYPEFVEDEDEEGTFSVPEEILVVLDMDEGT 195

  Fly   190 LSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRYIGGLDPEPLPLMDLCRRTIRQKIGRT 254
            |.|..|..|||:|||||:||:|||||||||||||::|.||.||||||||||:||||..||.:||.
Zfish   196 LGFCADGNYLGVAFRGLKGKRLYPIVSAVWGHCEVSMNYINGLDPEPLPLMELCRRAARQALGRH 260

  Fly   255 NLEEHIQQLQLPLSMKTYLLYK 276
            .: .|||.|.||.::|.||.|:
Zfish   261 RI-HHIQSLPLPQTLKNYLQYQ 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gusNP_001246140.1 SPRY_SOCS1-2-4 56..229 CDD:293963 112/177 (63%)
SOCS_SSB1_4 234..276 CDD:239688 24/41 (59%)
spsb4bNP_001003474.1 SPRY_SOCS1-2-4 57..235 CDD:293963 112/177 (63%)
SOCS_SSB4 240..281 CDD:239712 24/41 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595038
Domainoid 1 1.000 50 1.000 Domainoid score I11669
eggNOG 1 0.900 - - E1_KOG3953
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D399707at33208
OrthoFinder 1 1.000 - - FOG0002660
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12245
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1769
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.850

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