DRSC/TRiP Functional Genomics Resources

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Protein Alignment gus and SPCC1259.12c

DIOPT Version :9

Sequence 1:NP_001246140.1 Gene:gus / 35478 FlyBaseID:FBgn0026238 Length:279 Species:Drosophila melanogaster
Sequence 2:NP_588068.2 Gene:SPCC1259.12c / 2538867 PomBaseID:SPCC1259.12c Length:491 Species:Schizosaccharomyces pombe


Alignment Length:172 Identity:40/172 - (23%)
Similarity:68/172 - (39%) Gaps:35/172 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 SWNSEDRSLNIFVKEDDKLTFHRHPVAQST-DCIRGK----VGLTKGLHIWEIYWPTRQRGTHAV 116
            |||..|:|.::.:..::...:...|.|.:. |....|    :.....::.:||...:|.:.....
pombe    74 SWNPNDKSDSLELMNNNMGVYFFGPEAGTEHDAASVKADHAIPSNTSIYYYEIQILSRGKEGKMG 138

  Fly   117 VGVCTADAPLHSVGYQSLVGSTEQSWGWDLGRNKLYHDSK----NCAGVTYPAILKNDEA----F 173
            ||.|.     .|:....|.|.|.:|||        ||.:.    ||:        |..||    |
pombe   139 VGFCR-----KSMQTNRLPGCTAESWG--------YHGNSGEKFNCS--------KTGEAYGPEF 182

  Fly   174 LVPDKFLVALDMDEGTLSFIVDQQYLGIAFRGLRGKKLYPIV 215
            ...|.....::....|:.:..:..|||:||:.: ...|||::
pombe   183 TTGDIIGCGVNFINRTIFYTKNGAYLGVAFKKV-SDVLYPVI 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gusNP_001246140.1 SPRY_SOCS1-2-4 56..229 CDD:293963 40/172 (23%)
SOCS_SSB1_4 234..276 CDD:239688
SPCC1259.12cNP_588068.2 SPRY_RanBP9_10 102..238 CDD:293966 33/144 (23%)
LisH 274..299 CDD:285685
CTLH 308..361 CDD:128914
CLTH 309..470 CDD:287564
CRA 381..475 CDD:214806
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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