DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TpnC41C and calml4a

DIOPT Version :9

Sequence 1:NP_001246139.1 Gene:TpnC41C / 35473 FlyBaseID:FBgn0013348 Length:154 Species:Drosophila melanogaster
Sequence 2:NP_001124246.1 Gene:calml4a / 560151 ZFINID:ZDB-GENE-081022-9 Length:153 Species:Danio rerio


Alignment Length:157 Identity:44/157 - (28%)
Similarity:76/157 - (48%) Gaps:17/157 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSDELTKEQTALLRNAFNAFDPEKNGYINTAMVGTILSMLGHQLDDATLADIIAEVDE------- 58
            |:..|::.|....:..|:.:|.::.|.|....:.|::..||       .:....|||.       
Zfish     1 MAKFLSQNQIDEFKECFSLYDKKRKGKIEAKDLITVMRCLG-------TSPTYNEVDRHLQVHKI 58

  Fly    59 DGSGQIEFEEFTTLAARFLVEEDAEAMMAELKEAFRLYDKEGNGYITTGVLREILRELDDKLTND 123
            |.:|:::|..|.|:..|.:.:||.:   .|:.||.|:.||...|||....||..|..|.:|||:.
Zfish    59 DKTGELDFSTFLTMMHRQMQQEDPK---TEILEAMRMTDKHKKGYIQASELRAKLTGLGEKLTDK 120

  Fly   124 DLDMMIEEIDSDGSGTVDFDEFMEVMT 150
            ::|.:.:|......|.|.::||..::|
Zfish   121 EVDELFKEAHVGRDGLVHYEEFTRMVT 147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TpnC41CNP_001246139.1 PTZ00184 1..150 CDD:185504 43/155 (28%)
calml4aNP_001124246.1 PTZ00184 1..147 CDD:185504 43/155 (28%)
EFh 12..74 CDD:238008 15/68 (22%)
EFh 85..147 CDD:238008 22/61 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23050
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.