DRSC/TRiP Functional Genomics Resources

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Protein Alignment TpnC41C and Efcab6

DIOPT Version :9

Sequence 1:NP_001246139.1 Gene:TpnC41C / 35473 FlyBaseID:FBgn0013348 Length:154 Species:Drosophila melanogaster
Sequence 2:XP_038936237.1 Gene:Efcab6 / 315179 RGDID:1309065 Length:1509 Species:Rattus norvegicus


Alignment Length:181 Identity:38/181 - (20%)
Similarity:73/181 - (40%) Gaps:34/181 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ELTKEQTALLRNAFNAFDPEKNGYINTAMVGTILSMLGHQLDDATLADIIAEVDEDGSGQIEFEE 68
            ||.|.... :..|.:|.||.|.|||:...:..:|....::|...|...::.......:.::.:::
  Rat   316 ELVKSYEK-IEKALSAGDPSKGGYISLNYLKVVLDTFTYRLPRRTFIQLMRRFGLKTTTKVNWKQ 379

  Fly    69 FTTLA-----------------------ARFLVE-------EDAEAMMAELKEAFRLYDKEGNGY 103
            |.|..                       .||..|       :.:|.....||:|..:.....:|:
  Rat   380 FLTAVYERQGWEVSKTIPLKKRSSTEARNRFRKENIIKKLFKYSEERYTALKKALLIISPTPSGH 444

  Fly   104 ITTGVLREILRELDDKLTNDDLDMMIEEIDSDGSGTVDFDEFMEVMTGGDD 154
            :|...||.:|..:..||::.:.:.:.:..|.:|:|||.....::|:   ||
  Rat   445 VTWEDLRHVLNCVVVKLSDSEFNELKQTFDPEGTGTVKISSLLDVL---DD 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TpnC41CNP_001246139.1 PTZ00184 1..150 CDD:185504 36/175 (21%)
Efcab6XP_038936237.1 FRQ1 82..264 CDD:227455
EFh_parvalbumin_like <420..490 CDD:330177 16/69 (23%)
EF-hand motif 429..457 CDD:319994 8/27 (30%)
EF-hand motif 465..490 CDD:319994 5/24 (21%)
EFh_PI-PLC 869..980 CDD:333715
EF-hand motif 869..897 CDD:320029
EF-hand_7 873..927 CDD:404394
EF-hand motif 904..929 CDD:320029
FRQ1 1086..1247 CDD:227455
EF-hand_11 1170..1274 CDD:401068
PTZ00183 1335..1505 CDD:185503
EF-hand_7 1447..1507 CDD:404394
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342444
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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