DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir40a and Ir56c

DIOPT Version :9

Sequence 1:NP_610140.4 Gene:Ir40a / 35449 FlyBaseID:FBgn0259683 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_611431.1 Gene:Ir56c / 37251 FlyBaseID:FBgn0034457 Length:567 Species:Drosophila melanogaster


Alignment Length:718 Identity:127/718 - (17%)
Similarity:225/718 - (31%) Gaps:252/718 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 VCQKERNVYLDDFLQRLH----RSNYKSVVFSQTELFFQHIEENLQGANECISLILDEPNQLLNS 122
            |...:|...||:|:.|:.    :|..::||.:.||:                       ..:.:|
  Fly    24 VSPHQRLDQLDEFIMRIDEAFGKSATQTVVNNNTEM-----------------------RMIYSS 65

  Fly   123 LHDRHLGHRLSLFIFYWGARWP---PSSRVIRFREPLRVVVV-------TRPRKKAFRIYYNQAR 177
            ....|:.     |:|..||..|   ..|:|:..|.....:|:       ..|........|||  
  Fly    66 ARRNHMS-----FVFTTGAEDPIMKVFSKVLLGRHFYVSMVIYVDKVGDMHPIYDLLTFAYNQ-- 123

  Fly   178 PCSDSQLQLVN------WYDGDN--LGLQRIPLLPTALSVYANFKGRT----------------- 217
                   |..|      ..:|.|  .|:.:.|::        :|:.||                 
  Fly   124 -------QFFNSMVHFESMEGVNQLFGVSKFPVM--------SFENRTDFLKYMGKIWKQVQNAR 173

  Fly   218 -------FRVPVFHSPPWFWVTYCNNSFEEDEEFNSLDSIEKRKVRVTGGRDHRLLMLLSKHMNF 275
                   |..|:....|        :.|:....::              |..:|::....:.:|.
  Fly   174 SDVGGFGFTTPLRQDLP--------HLFQSQGHYD--------------GSTYRIIETFVRFING 216

  Fly   276 RFKYIEAPGRTQGSMRSEDGKDSNDSFTGGIGLLQSGQADF-------FLGDVGLSWERRKAIEF 333
            .||.:..|..:.|      |:..|  ....:.|::..:.:|       |:.|        :.:|.
  Fly   217 SFKELIMPPDSLG------GQVIN--MKDALQLIRERKMEFCAHAYALFMSD--------EELEK 265

  Fly   334 SFFTLADSGAFATHAPRRLNEALAIMRPFKQDIWPHLILTIIFSGPIFYGIIALPYIWRRR---W 395
            |:..|.............::.....::||..::|       .|:......::.|..:|.|.   |
  Fly   266 SYPLLVVQWCLMVPLYNSVSTYFYPLQPFDWNVW-------FFALGALLALVLLELMWLRMFGGW 323

  Fly   396 ANSDVEHLGELYIHMTYLKEITPRLLKLKPRTVLSAHQMPHQLFQKCIWFTLRLFLKQSCNELHN 460
            :.    :.|.:.....|:..:                .:..||.|.|:   ||..|         
  Fly   324 SG----YRGAVLNSFCYIINV----------------PIEGQLQQPCL---LRFLL--------- 356

  Fly   461 GYRAKFLTIVYWIAATYVLADVYSAQLTSQFARPAREPPINTLQRLQAA----MIHDGYRLYVEK 521
                  |..|::..  :.|:..|::.|.|..........|||:..:.:|    ||.|        
  Fly   357 ------LATVFFHG--FFLSAYYTSNLGSILTVNLFHAQINTMNDIVSAQLPVMIID-------- 405

  Fly   522 ESSSLEMLEN-GTELFRQLYALMR----------QQVINDPQGFFIDSVEAGIKLIAEGGEDKAV 575
              ..:|.|.| ..||.::...|:|          |...|....:|:.             ||   
  Fly   406 --YEMEFLLNLNKELPQEFLELLRPVDSAVFSEHQTSFNSSFAYFVT-------------ED--- 452

  Fly   576 LGGRETLFFNVQQ--YGSNNFQLSQKLYTRYS-AVAVQIGCPFLGSLNNVLMQLFESGILDKMTA 637
                ...|.:.||  .....|:||...:..|. |..:|:.......:.....::..||:|:....
  Fly   453 ----HWEFLDEQQKHLKQRLFKLSSICFGSYHLAFPLQMDSSLWRDIEYFTFRIHSSGLLNFYAR 513

  Fly   638 AEYAKQYQEVEATRIYKGSVQAKNSEAYSRTESYDSTVISPLNLRMLQGAFIALGVGSLAAGVIL 702
            :.:        .:.::.|.||....     |:.|.|.     .|:.|..|||.|.|.|..||::.
  Fly   514 SSF--------GSALHAGLVQRMPD-----TQEYTSA-----GLQHLAIAFILLLVMSFLAGIVF 560

  Fly   703 LLE 705
            :||
  Fly   561 VLE 563

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir40aNP_610140.4 PBP2_LTTR_substrate 216..338 CDD:330233 21/152 (14%)
Periplasmic_Binding_Protein_Type_2 297..>391 CDD:328725 13/100 (13%)
Periplasmic_Binding_Protein_Type_2 <496..637 CDD:328725 31/158 (20%)
Ir56cNP_611431.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR42643
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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