DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir40a and GluRIIB

DIOPT Version :9

Sequence 1:NP_610140.4 Gene:Ir40a / 35449 FlyBaseID:FBgn0259683 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_523485.3 Gene:GluRIIB / 33789 FlyBaseID:FBgn0020429 Length:913 Species:Drosophila melanogaster


Alignment Length:748 Identity:143/748 - (19%)
Similarity:250/748 - (33%) Gaps:217/748 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 KERNVYLD---DFLQRLHRSNYKSVVFSQT----ELFFQHIEENLQGANECISL----------- 111
            :|:.|.||   |.|..:..:   |:.::.|    .||..:::.:|.|.:...|.           
  Fly   208 REKFVLLDCPSDILVDVINA---SIGYNMTGSFNHLFLTNLDTHLSGIDGFYSRDFTVAVAAVRI 269

  Fly   112 -------ILDEPNQLLNSLHDR--HLGHRL---SLFIFY-------------------WGARWPP 145
                   :.||.:...||:..|  .||.:|   |:.:||                   ....|.|
  Fly   270 RTYVPPPVHDEIDVFDNSVDTRFSSLGSQLVYDSIVLFYNALLEISQRPGFYIPNFSCGRGFWQP 334

  Fly   146 SSRVIRFREPLRVVV--VTRPRKKAFRIYYNQARPCSDSQLQLVN---------WYDGDNLGLQR 199
            ..|::   |.::.:.  :.:|..|..|:..|......|..|::.|         |    |...|.
  Fly   335 GPRLV---EQMKQITPKMVKPPFKTQRLQINADGQREDFNLEVYNPIIDRVTHIW----NKEFQL 392

  Fly   200 I-----------PLLPTALSVYANFKGRTFRVPVFH--SPPWFWVTYCNNSFEEDEEFNSLDSIE 251
            :           .|....|....:|..:..|..|..  ..|:|       |:.|:.|....:..|
  Fly   393 VDFEKLRENSTQALKQKRLQNKEDFSQKPIRYTVATRVGKPYF-------SWREEPEGVHYEGNE 450

  Fly   252 KRKVRVTGGRDHRLLMLLSKHMNFRFKYIEAPGRTQGSMRSEDGKDSN-DSFTGGIGLLQSGQAD 315
            :.:     |....|:.:|::...|.|.:........||.      |:| |.:.|.|..|....|.
  Fly   451 RFE-----GYAVDLIYMLAQECKFDFNFEPVRDNKYGSY------DANTDEWDGIIRQLIDNNAQ 504

  Fly   316 FFLGDVGLSWERRKAIEFS--FFTLADSGAFATHAPRRLNEALAIMRPFKQDIWPHLILTIIFS- 377
            ..:.|:.::..||..::|:  |..|..| ..:...|....:..|.:.|:..::|..:::.::.: 
  Fly   505 IGICDLTITQARRSVVDFTVPFMQLGIS-ILSYKEPPPKADIYAFLNPYNAEVWLFVMIAMMITA 568

  Fly   378 -GPIFYGIIALPYIW-------RRRWANSDVEHLGELYIHMTYLKEITPRLLKLKPRTVLSAHQM 434
             ..||.|.|. .|.|       .|.....::.||                               
  Fly   569 FALIFTGRID-QYEWDQPVENVNREMERQNIWHL------------------------------- 601

  Fly   435 PHQLFQKCIWFTLRLFLKQSCNELHNGYRAKFLTIVYWIAATYVLADVYSAQLTSQFARPAREPP 499
                 ...:|..|...|.|.|:.|..|...:.||..:||.| .:::..|.|:|.:..........
  Fly   602 -----SNALWLVLGSMLNQGCDLLPRGLPMRLLTAFWWIFA-LLISQTYIAKLAAFITSSKIAGD 660

  Fly   500 INTL------QRLQAAMIHDGYRLYVEKESSSLE--MLENGTELFRQLYALMRQQVINDPQGFFI 556
            |.:|      .::|...|..|.......||:..:  |..|....|:             |..|..
  Fly   661 IGSLHDLVDQNKVQFGTIRGGATSVYFSESNDTDNRMAWNKMLSFK-------------PDAFTK 712

  Fly   557 DSVEAGIKLIAEGGEDKAVLGGRETLFF----NVQQYGSNNFQLSQ---KLYTRYSAVAVQIGCP 614
            ::         |.|.|:..|......|.    |:|.|...|.:|:|   ....::..:||.:...
  Fly   713 NN---------EEGVDRVKLSKGTYAFLMETTNLQYYVQRNCELTQIGESFGEKHYGIAVPLNAD 768

  Fly   615 FLGSLNNVLMQLFESGILDKMTAAEYAKQYQEVEATRIYKGSVQAKNSEAYSRTESYDSTVIS-- 677
            |..:|:..:::|.|.|.|.|:                        :|....|...:.||.|.:  
  Fly   769 FRSNLSVGILRLSERGELFKL------------------------RNKWFNSNESTCDSNVPTID 809

  Fly   678 --PLNLRMLQGAFIALGVGSLAAGVILLLEIVF 708
              ..::..:.|.|:.|.||.:...||.:.|.::
  Fly   810 DGQFDMDSVGGLFVVLIVGVVVGLVIGVAEFLW 842

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir40aNP_610140.4 PBP2_LTTR_substrate 216..338 CDD:330233 27/126 (21%)
Periplasmic_Binding_Protein_Type_2 297..>391 CDD:328725 23/98 (23%)
Periplasmic_Binding_Protein_Type_2 <496..637 CDD:328725 32/155 (21%)
GluRIIBNP_523485.3 PBP1_iGluR_Kainate 26..393 CDD:107377 38/194 (20%)
ANF_receptor 41..378 CDD:279440 35/175 (20%)
PBP2_iGluR_Kainate 422..795 CDD:270432 90/475 (19%)
Lig_chan 555..822 CDD:278489 63/350 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462627
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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