DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir40a and Grik1

DIOPT Version :10

Sequence 1:NP_610140.4 Gene:Ir40a / 35449 FlyBaseID:FBgn0259683 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_001104587.1 Gene:Grik1 / 29559 RGDID:2732 Length:949 Species:Rattus norvegicus


Alignment Length:512 Identity:101/512 - (19%)
Similarity:184/512 - (35%) Gaps:129/512 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   241 DEEFNSLDSIEKRKVRVTG-----------------GRDH------RLLMLLSKHMNFRFKYIEA 282
            |...|..||:..|.:.||.                 |.|.      .||..||..:.|.:.....
  Rat   435 DRSNNITDSLANRTLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLV 499

  Fly   283 PGRTQGSMRSEDGK--DSND--SFTGGIGLLQSGQADFFLGDVGLSWERRKAIEFS--FFTLADS 341
            |          |||  ..||  .:.|.:..|...:||..:..:.:::.|.|.|:||  |.||..|
  Rat   500 P----------DGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGIS 554

  Fly   342 GAFATHAPRRLNEAL-AIMRPFKQDIWPHLILTIIFSGPIFYGIIA--LPYIW-RRRWANSDVEH 402
            ..:  ..|...|..: :.:.|...|||.:::|..:....:.: :||  .||.| .....|.|.:.
  Rat   555 ILY--RKPNGTNPGVFSFLNPLSPDIWMYVLLACLGVSCVLF-VIARFTPYEWYNPHPCNPDSDV 616

  Fly   403 LGELYIHMTYLKEITPRLLKLKPRTVLSAHQMPHQLFQKCIWFTLRLFLKQSCNELHNGYRAKFL 467
            :...:                   |:|::           .||.:...::|....:......:.:
  Rat   617 VENNF-------------------TLLNS-----------FWFGVGALMQQGSELMPKALSTRIV 651

  Fly   468 TIVYWIAATYVLADVYSAQLTSQFARPAREPPINTLQ------RLQAAMIHDGYRLYVEKESSSL 526
            ..::|. .|.::...|:|.|.:.......|.||::..      :::...:.||..:...|:|.  
  Rat   652 GGIWWF-FTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGSTMTFFKKSK-- 713

  Fly   527 EMLENGTELFRQLYALMRQQVINDPQGFFIDSVEAGIKLIAEGGEDKAVLGGRETLFFNVQQYGS 591
                  ...:.:::|.|..:    .|...:.:.:.||:.:..  .|.|:|....::.: |.|...
  Rat   714 ------ISTYEKMWAFMSSR----QQSALVKNSDEGIQRVLT--TDYALLMESTSIEY-VTQRNC 765

  Fly   592 NNFQLSQKLYTRYSAVAVQIGCPFLGSLNNVLMQLFESGILDKMTAAEYAKQYQEVEATRIYKGS 656
            |..|:...:.::...|...||.|:...:...::||.|.|.|..|             ..:.::| 
  Rat   766 NLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMM-------------KEKWWRG- 816

  Fly   657 VQAKNSEAYSRTESYDSTVISPLNLRMLQGAFIALGVGSLAAGVILLLEIVFIKLDQ 713
                     :.....||...|.|.:..:.|.||.     ||||::|   .||:.:.:
  Rat   817 ---------NGCPEEDSKEASALGVENIGGIFIV-----LAAGLVL---SVFVAIGE 856

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir40aNP_610140.4 Lig_chan-Glu_bd <265..336 CDD:463166 20/76 (26%)
Periplasmic_Binding_Protein_Type_2 297..>391 CDD:473866 26/100 (26%)
Periplasmic_Binding_Protein_Type_2 <496..637 CDD:473866 29/146 (20%)
Grik1NP_001104587.1 PBP1_iGluR_Kainate 38..431 CDD:380605
Periplasmic_Binding_Protein_Type_2 446..815 CDD:473866 82/440 (19%)
Blue background indicates that the domain is not in the aligned region.

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