DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir40a and GRIN2C

DIOPT Version :9

Sequence 1:NP_610140.4 Gene:Ir40a / 35449 FlyBaseID:FBgn0259683 Length:732 Species:Drosophila melanogaster
Sequence 2:XP_016880033.1 Gene:GRIN2C / 2905 HGNCID:4587 Length:1337 Species:Homo sapiens


Alignment Length:512 Identity:93/512 - (18%)
Similarity:172/512 - (33%) Gaps:165/512 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 LLMLLSKHMNFRFK-YIEAPGRTQGSMRSEDGKDSNDSFTGGIGLLQSGQADFFLGDVGLSWERR 328
            :|..|::.:.|.:. |:...|:        .||.....:.|.||.:...:||..:|.:.::.||.
Human   536 ILKKLARVVKFSYDLYLVTNGK--------HGKRVRGVWNGMIGEVYYKRADMAIGSLTINEERS 592

  Fly   329 KAIEFSFFTLADSGAFATHAPRRLNEAL---AIMRPFKQDIWPHLILTIIFSGPIFYGIIALPYI 390
            :.::|| ....::|.....|  |.|..:   |.:.|:...:|..:.:..:       .::|:...
Human   593 EIVDFS-VPFVETGISVMVA--RSNGTVSPSAFLEPYSPAVWVMMFVMCL-------TVVAITVF 647

  Fly   391 WRRRWANSDVEHLGELYIHMTYLKEITPRLLKLKPRTVLSAHQMPHQLFQKCIWFTLRLFLKQSC 455
                        :.|.:..::|.:.:|.......|...:.          |.:|....|....|.
Human   648 ------------MFEYFSPVSYNQNLTRGKKSGGPAFTIG----------KSVWLLWALVFNNSV 690

  Fly   456 N-ELHNGYRAKFLTIVYWIAATYVLADVYSAQL-------------------------------- 487
            . |...|..:|.:.:|:...|...||. |:|.|                                
Human   691 PIENPRGTTSKIMVLVWAFFAVIFLAS-YTANLAAFMIQEQYIDTVSGLSDKKSLHLENTGVAWT 754

  Fly   488 ------TSQFARPARE-PPI---------------NTLQRLQAAMIHDGYRLYVEKESSSLEMLE 530
                  :..|.||..: ||.               :..:.:...|:....| .||...:||:|..
Human   755 AFKTFCSDYFQRPQDQYPPFRFGTVPNGSTERNIRSNYRDMHTHMVKFNQR-SVEDALTSLKMGS 818

  Fly   531 NGTELFRQLYALMRQ-QVINDPQGFFIDSVEAGIKLIAEG-GEDKAVLGGRETLFFNVQQYGSNN 593
            ....:.|:|.|.:.. .|:|     ::...:.|.||:..| |:..|..|           ||   
Human   819 EAQPVPRKLDAFIYDAAVLN-----YMAGKDEGCKLVTIGSGKVFATTG-----------YG--- 864

  Fly   594 FQLSQKLYTRYSAVAVQIGCPFLGSLNNVLMQLFESGILDKMTAAEYAKQYQEVEATRIYKGSVQ 658
                         :|:|....:..:::..|:|....|            :.|::|...: .|..|
Human   865 -------------IAMQKDSHWKRAIDLALLQFLGDG------------ETQKLETVWL-SGICQ 903

  Fly   659 AKNSEAYSRTESYDSTVISPLNLRMLQGAFIALGVGSLAAGVILLL----EIVFIKL 711
            .:.:|..|          |.|::..:.|.|..|.|   |.|:.||:    .:|:.||
Human   904 NEKNEVMS----------SKLDIDNMAGVFYMLLV---AMGLALLVFAWEHLVYWKL 947

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir40aNP_610140.4 PBP2_LTTR_substrate 216..338 CDD:330233 17/73 (23%)
Periplasmic_Binding_Protein_Type_2 297..>391 CDD:328725 18/96 (19%)
Periplasmic_Binding_Protein_Type_2 <496..637 CDD:328725 28/158 (18%)
GRIN2CXP_016880033.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156157
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.