DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir40a and Grik5

DIOPT Version :9

Sequence 1:NP_610140.4 Gene:Ir40a / 35449 FlyBaseID:FBgn0259683 Length:732 Species:Drosophila melanogaster
Sequence 2:XP_006228444.1 Gene:Grik5 / 24407 RGDID:2735 Length:980 Species:Rattus norvegicus


Alignment Length:727 Identity:130/727 - (17%)
Similarity:246/727 - (33%) Gaps:207/727 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LAILALPSLALSDGVCQKERNV-----------YLDDFLQRLH---RSNYKSVVFSQTELFFQHI 98
            |..:..|.|.| ||:.:...|:           :..:|::.|:   |.|.::..:          
  Rat   244 LTTMDFPILHL-DGIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTY---------- 297

  Fly    99 EENLQGANECISLILDEPNQLLNSLHDRHLGHRLSLFIFYWGAR---------WPPSSRVIRFRE 154
                .|.....:|:.|..:.:::::.:.:....:       |.:         ||..:.::.:..
  Rat   298 ----PGPALSAALMFDAVHVVVSAVRELNRSQEI-------GVKPLACTSANIWPHGTSLMNYLR 351

  Fly   155 PLRVVVVTRPRKKAFRIYYNQARPCSDSQLQLVN-----------WYDGDNLGLQRIPLLPTALS 208
            .:....:|.      |:.:|.....::..|:::.           ||....|.:....|......
  Rat   352 MVEYDGLTG------RVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRTLAMNATTLDINLSQ 410

  Fly   209 VYANFKGRTFRV-PVFHSP-----PWFWVTYCNNSFEEDEEFNSLDSIEKRKVRVTGGRDHRLLM 267
            ..||   :|..| .:..:|     |.|.....|..||                    |....:|.
  Rat   411 TLAN---KTLVVTTILENPYVMRRPNFQALSGNERFE--------------------GFCVDMLR 452

  Fly   268 LLSKHMNFRFKYIEAPGRTQGSMR-SEDG----KDSNDSFTGGIG-LLQSGQADFFLGDVGLSWE 326
            .|::.:.||::           :| .|||    .:.|.|:||.:| |:...:||..:....::.|
  Rat   453 ELAELLRFRYR-----------LRLVEDGLYGAPEPNGSWTGMVGELINRQKADLAVAAFTITAE 506

  Fly   327 RRKAIEFS--FFTLADSGAFATHAPRRLNEALAIMRPFKQDIWPHLILT-IIFSGPIFYGIIALP 388
            |.|.|:||  |.||..|..:..|..|:.. ..:.:.||...:|..::|. :..|..:|......|
  Rat   507 REKVIDFSKPFMTLGISILYRVHMGRKPG-YFSFLDPFSPAVWLFMLLAYLAVSCVLFLAARLSP 570

  Fly   389 YIWRRRWANSDVEHLGELYIHMTYLKEITPRLLKLKPRTVLSAHQMPHQL-----FQKCIWFTLR 448
            |.|                               ..|...|.|.  ||.|     ....:||.:.
  Rat   571 YEW-------------------------------YNPHPCLRAR--PHILENQYTLGNSLWFPVG 602

  Fly   449 LFLKQSCNELHNGYRAKFLTIVYWIAATYVLADVYSAQLTSQFARPAREPPINTLQ------RLQ 507
            .|::|....:......:.::.|:| |.|.::...|:|.|.:.......|.|:.:..      .::
  Rat   603 GFMQQGSEIMPRALSTRCVSGVWW-AFTLIIISSYTANLAAFLTVQRMEVPVESADDLADQTNIE 666

  Fly   508 AAMIHDGYRLYVEKESSSLEMLENGTELFRQLYALMRQQVINDPQGFFIDSVEAGIKLIAEGGED 572
            ...||.|         |::...:|..   .|.|..|...:.:.....|:.|.|.||         
  Rat   667 YGTIHAG---------STMTFFQNSR---YQTYQRMWNYMQSKQPSVFVKSTEEGI--------- 710

  Fly   573 KAVLGGRETLFF--NVQQY----GSNNFQLSQKLYTRYSAVAVQIGCPFLGSLNNVLMQLFESGI 631
            ..||..|.....  .:.:|    ..|..|:...|.|:...:.:.:|.||...:...::||.|:..
  Rat   711 ARVLNSRYAFLLESTMNEYHRRLNCNLTQIGGLLDTKGYGIGMPLGSPFRDEITLAILQLQENNR 775

  Fly   632 LDKMTAAEYAKQYQEVEATRIYKGSVQAKNSEAYSRTESYDSTVISPLNLRMLQGAFIALGVGSL 696
            |             |:...:.::|....|..:..::          .|.:..:.|.|:.|..|.:
  Rat   776 L-------------EILKRKWWEGGRCPKEEDHRAK----------GLGMENIGGIFVVLICGLI 817

  Fly   697 AAGVILLLEIVF 708
            .|..:.::|.::
  Rat   818 IAVFVAVMEFIW 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir40aNP_610140.4 PBP2_LTTR_substrate 216..338 CDD:330233 32/135 (24%)
Periplasmic_Binding_Protein_Type_2 297..>391 CDD:328725 28/97 (29%)
Periplasmic_Binding_Protein_Type_2 <496..637 CDD:328725 30/152 (20%)
Grik5XP_006228444.1 PBP1_iGluR_Kainate_KA1_2 23..401 CDD:380616 24/184 (13%)
Periplasmic_Binding_Protein_Type_2 414..785 CDD:389745 95/473 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350101
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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