DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir40a and Grin3a

DIOPT Version :10

Sequence 1:NP_610140.4 Gene:Ir40a / 35449 FlyBaseID:FBgn0259683 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_612555.1 Gene:Grin3a / 191573 RGDID:621704 Length:1135 Species:Rattus norvegicus


Alignment Length:505 Identity:100/505 - (19%)
Similarity:178/505 - (35%) Gaps:157/505 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   235 NNSFEEDEEFNSL----DSIEKRKVRVTGGRDHRLLMLLSKHMNFRFK-YIEAPGRTQGSMRSED 294
            |:|...|..|:||    |::..:..:...|....||..|::.|||.|. ||...|:.        
  Rat   549 NDSSMLDRLFSSLHSSNDTVPIKFKKCCYGYCIDLLEQLAEDMNFDFDLYIVGDGKY-------- 605

  Fly   295 GKDSNDSFTGGIGLLQSGQADFFLGDVGLSWERRKAIEFS--FF------------TLADSGAFA 345
            |...|..:||.:|.|.||.|:..:....::..|.:.|:|:  ||            |.|..||| 
  Rat   606 GAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAF- 669

  Fly   346 THAPRRLNEALAIMRPFKQDIWPHLILTIIFSGPIFYGIIALPYIWRRRWANSDVEHLGELYIHM 410
                         |.|....:|..:.:.:..:. ||..:    |.|:..:.              
  Rat   670 -------------MWPLHWTMWLGIFVALHITA-IFLTL----YEWKSPFG-------------- 702

  Fly   411 TYLKEITPR-LLKLKPRTVLSAHQMPHQLFQKCIWFTLRLFLKQSCNELHNGYRAKFLTIVYWIA 474
                 :||: ..:.|..:..||..:.:.|          ||.:.:..:....:..:||..::.|.
  Rat   703 -----MTPKGRNRNKVFSFSSALNVCYAL----------LFGRTAAIKPPKCWTGRFLMNLWAIF 752

  Fly   475 ATYVLADVYSAQLTSQFARPAREPPINTLQRLQAAMIH---DGYRLYVEKESSSLEMLENGTELF 536
            ..:.|: .|:|.|.   |....|.....|..:....:|   .|:|....:|||:.:.:.   :.|
  Rat   753 CMFCLS-TYTANLA---AVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVR---QSF 810

  Fly   537 RQLYALMR-----------QQVINDPQ---GFFID--------SVEAGIKLIAEGGEDKAVLGGR 579
            .:::..||           |.:.|||:   .|.:|        |::|..||:..|..        
  Rat   811 PEMHEYMRRYNVPATPDGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKP-------- 867

  Fly   580 ETLFFNVQQYGSNNFQLSQKLYTRYSAVAVQIGCPFLGSLNNVLMQLFESGILDKMTAAEYAKQY 644
                |.::.||                :.:....|...:::.::.|....|.:|.:    :.|.|
  Rat   868 ----FAIEGYG----------------IGLPPNSPLTSNISELISQYKSHGFMDVL----HDKWY 908

  Fly   645 QEVEATRIYKGSVQAKNSEAYSRTESYDSTVISPLNLRMLQGAFIALGVG 694
            :.|..         .|.|.|.:.|        ..:.::...|.|:.|.:|
  Rat   909 KVVPC---------GKRSFAVTET--------LQMGIKHFSGLFVLLCIG 941

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir40aNP_610140.4 Lig_chan-Glu_bd <265..336 CDD:463166 22/73 (30%)
Periplasmic_Binding_Protein_Type_2 297..>391 CDD:473866 24/107 (22%)
Periplasmic_Binding_Protein_Type_2 <496..637 CDD:473866 29/165 (18%)
Grin3aNP_612555.1 PBP1_iGluR_NMDA_NR3 40..496 CDD:380600
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 60..117
PBP2_iGluR_NMDA_Nr3 512..908 CDD:270438 90/453 (20%)
Lig_chan 674..941 CDD:459656 60/356 (17%)
PPP2CB binding site. /evidence=ECO:0000269|PubMed:11588171 951..987
GIT1-binding. /evidence=ECO:0000269|PubMed:24297929 1082..1115
Blue background indicates that the domain is not in the aligned region.

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