DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir40a and gria3a

DIOPT Version :9

Sequence 1:NP_610140.4 Gene:Ir40a / 35449 FlyBaseID:FBgn0259683 Length:732 Species:Drosophila melanogaster
Sequence 2:XP_005165152.1 Gene:gria3a / 170452 ZFINID:ZDB-GENE-020125-5 Length:903 Species:Danio rerio


Alignment Length:664 Identity:128/664 - (19%)
Similarity:240/664 - (36%) Gaps:174/664 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 QKERNVYLDDFLQRLHRSNYKSVVFSQTELFFQHIEENLQGANECISLILD-----EPNQLLNSL 123
            ::|:...:|..::|::....:.|:..:....:.:|..||...|..:..:..     ...|::|. 
Zfish   205 RQEKRFLIDCEVERINSILEQVVIAGKNSRGYHYILANLGFTNMSLDKVFSGGANITGFQIINP- 268

  Fly   124 HDRHLGHRLSLFIFYW---GARWPPSSRVIRFREPLR---------VVVVTRPRKKAFRIYYNQ- 175
             |..:   :..|:..|   ..|..|.||    ..||:         ::|:.    :|||....| 
Zfish   269 -DSPI---VQQFLQRWERLDEREFPESR----SSPLKYTSALTHDAILVIA----EAFRYLRRQR 321

  Fly   176 -------------ARPCSDSQLQLVNWYDGDNLGLQRIPLLPTALSVYANFK----GR--TFRVP 221
                         |.|.       |.|..|  :.::|...:.....:..|.:    ||  .:.|.
Zfish   322 VDISRRGSAGDCLANPA-------VPWSQG--IDIERALKMVQVQGMTGNIQFDSFGRRSNYTVD 377

  Fly   222 VFHSPP------WFWVTYCNNSFE------EDEEFNSLDSIEKRKVRVT---------------- 258
            |:...|      .:|     |.||      |.:..|...|:|.|.:.||                
Zfish   378 VYEMKPGGARKIGYW-----NEFEKFVYIVEQQVTNESSSVENRTIVVTTIMEAPYVMYKRNYMQ 437

  Fly   259 -GGRDH------RLLMLLSKHMNFRFKY-IEAPGRTQGSMRSEDGKDSNDSFTGGIGLLQSGQAD 315
             .|.|.      .|...::||:..::|. |.|.|: .|:...|     ..::.|.:|.|..|:||
Zfish   438 LEGNDRYEGYCVDLASEIAKHVGIKYKLSIVADGK-YGARDPE-----TKTWNGMVGELVYGRAD 496

  Fly   316 FFLGDVGLSWERRKAIEFS--FFTLADSGAFATHAPRRLNEAL-AIMRPFKQDIWPHLILTIIFS 377
            ..:..:.::..|.:.|:||  |.:|..|  .....|::....: :.:.|...:||    :.|:|:
Zfish   497 IAVAPLTITLVREEVIDFSKPFMSLGIS--IMIKKPQKSKPGVFSFLDPLAYEIW----MCIVFA 555

  Fly   378 GPIFYGIIAL--------PYIWRRRWANSDVEHLGELYIHMTYLKEITPRLLKLKPRTVLSAHQM 434
               :.|:..:        ||.|          ||.:        .|.|.     .|:|   ....
Zfish   556 ---YIGVSVVLFLVSRFSPYEW----------HLDD--------NEETK-----DPQT---PPDP 591

  Fly   435 PHQ--LFQKCIWFTLRLFLKQSCNELHNGYRAKFLTIVYWIAATYVLADVYSAQLTSQFARPARE 497
            |:.  :|.. :||:|..|::|.|:........:.:..|:|. .|.::...|:|.|.:........
Zfish   592 PNDFGIFNS-LWFSLGAFMQQGCDISPRSLSGRIVGGVWWF-FTLIIISSYTANLAAFLTVERMV 654

  Fly   498 PPINTLQRLQAAMIHDGYRLYVEKESSSLEMLENGT--ELFRQ----LYALMRQQVINDPQGFFI 556
            .||.:.:.|            .::...:...|::|:  |.||:    :|..|...:.:.....|:
Zfish   655 SPIESAEDL------------AKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWSYMKSAEPSVFV 707

  Fly   557 DSVEAGIKLIAEGGEDKAVLGGRETLFFNVQQYGSNNFQLSQKLYTRYSAVAVQIGCPFLGSLNN 621
            .:...|:..:.:.....|.|.......:..|:...:..::...|.::...||...|......:|.
Zfish   708 KTTPDGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALRTPVNL 772

  Fly   622 VLMQLFESGILDKM 635
            .:::|.|.|||||:
Zfish   773 AVLKLSEQGILDKL 786

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir40aNP_610140.4 PBP2_LTTR_substrate 216..338 CDD:330233 37/161 (23%)
Periplasmic_Binding_Protein_Type_2 297..>391 CDD:328725 22/104 (21%)
Periplasmic_Binding_Protein_Type_2 <496..637 CDD:328725 27/146 (18%)
gria3aXP_005165152.1 PBP1_iGluR_AMPA_GluR3 28..399 CDD:107382 40/220 (18%)
ANF_receptor 39..382 CDD:279440 35/198 (18%)
PBP2_iGluR_AMPA 415..797 CDD:270433 84/427 (20%)
Lig_chan 547..810 CDD:278489 55/287 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591652
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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