DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir40a and Grin2a

DIOPT Version :9

Sequence 1:NP_610140.4 Gene:Ir40a / 35449 FlyBaseID:FBgn0259683 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_032196.2 Gene:Grin2a / 14811 MGIID:95820 Length:1464 Species:Mus musculus


Alignment Length:811 Identity:148/811 - (18%)
Similarity:240/811 - (29%) Gaps:292/811 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 TFIGNDES-----DTAI--ALTQIVRGLQQSSLAILALPSLALSDGVCQKERNVYLDDFLQRLHR 80
            :|:|.|..     ||:.  |.||:......||:.:|          .|.|:..|.:....:.|..
Mouse   194 SFVGWDMQNVITLDTSFEDAKTQVQLKKIHSSVILL----------YCSKDEAVLILSEARSLGL 248

  Fly    81 SNY------KSVVFSQTELF-----------------------------------------FQHI 98
            :.|      .|:|...|||.                                         |.:|
Mouse   249 TGYDFFWIVPSLVSGNTELIPKEFPSGLISVSYDDWDYSLEARVRDGLGILTTAASSMLEKFSYI 313

  Fly    99 EE---NLQGANECISLILDEPNQLLNSLHDRHLGHRLSLFIFYWGARWPPSSRVIRFRE------ 154
            .|   :..|..|       :|...|::||.           |.....|  ..:.:.|.|      
Mouse   314 PEAKASCYGQTE-------KPETPLHTLHQ-----------FMVNVTW--DGKDLSFTEEGYQVH 358

  Fly   155 PLRVVVVTR-----------------------PRKKAFRIYYNQARPCSDSQLQLVNWYDGDNLG 196
            |..||:|..                       ||.|:|    :...| .|:.|.:|...:...:.
Mouse   359 PRLVVIVLNKDREWEKVGKWENQTLSLRHAVWPRYKSF----SDCEP-DDNHLSIVTLEEAPFVI 418

  Fly   197 LQRI-PLLPTALSVYANFKGRTFRVPVFHSPPWFWVTYCNNSFEEDEEFNS------LDSIEKRK 254
            ::.| ||..|.               |.::.|.......|||..|......      :|.::|  
Mouse   419 VEDIDPLTETC---------------VRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKK-- 466

  Fly   255 VRVTGGRDHRLLMLLSKHMNFRFK-YIEAPGRTQGSMRSEDGKDSNDSFTGGIGLLQSGQADFFL 318
                          ||:.:.|.:. |:...|:        .||..|:.:.|.||.:...:|...:
Mouse   467 --------------LSRTVKFTYDLYLVTNGK--------HGKKVNNVWNGMIGEVVYQRAVMAV 509

  Fly   319 GDVGLSWERRKAIEFSF------FTLADSGAFATHAPRRLNEALAIMRPFKQDIW--PHLILTII 375
            |.:.::.||.:.::||.      .::..|.:..|.:|.      |.:.||...:|  ..::|.|:
Mouse   510 GSLTINEERSEVVDFSVPFVETGISVMVSRSNGTVSPS------AFLEPFSASVWVMMFVMLLIV 568

  Fly   376 FSGPIFYGIIALPYIWRRRWANSDVEHLGELYIHMTYLKEITPRLLKLKPRTVLSAHQMPHQLFQ 440
            .:..:|......|..:.|..|.....|                               .|.....
Mouse   569 SAIAVFVFEYFSPVGYNRNLAKGKAPH-------------------------------GPSFTIG 602

  Fly   441 KCIWFTLRLFLKQSCNELHN--GYRAKFLTIVYWIAATYVLADVYSAQLTSQFARPAREPPINTL 503
            |.||....|....|. .:.|  |..:|.:..|:...|...||. |:|.|.:...:......:..|
Mouse   603 KAIWLLWGLVFNNSV-PVQNPKGTTSKIMVSVWAFFAVIFLAS-YTANLAAFMIQEEFVDQVTGL 665

  Fly   504 QRLQAAMIHD---GYRLYVEKESSSLEMLENGTELFRQLYALMRQQVINDP---------QGFFI 556
            ...:....||   .:|.......|:...:.|......|......|:.:.|.         ..|..
Mouse   666 SDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTKFNQRGVEDALVSLKTGKLDAFIY 730

  Fly   557 DSV--------EAGIKLIAEGGEDKAVLGGRETLFFNVQQYGSNNFQLSQKLYTRYSAVAVQIGC 613
            |:.        :.|.||:..|          ....|....||                :|:|.|.
Mouse   731 DAAVLNYKAGRDEGCKLVTIG----------SGYIFATTGYG----------------IALQKGS 769

  Fly   614 PFLGSLNNVLMQLFESGILDKMTAAEYAKQYQEVEATRIYKGSVQAKNSEAYSRTESYDSTVISP 678
            |:...::..|:|....|            :.:|:| |....|....:.:|..|          |.
Mouse   770 PWKRQIDLALLQFVGDG------------EMEELE-TLWLTGICHNEKNEVMS----------SQ 811

  Fly   679 LNLRMLQGAFIALGVGSLAAGVILLLEIVFI 709
            |::..:.|.|.     .|||.:.|.| |.||
Mouse   812 LDIDNMAGVFY-----MLAAAMALSL-ITFI 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir40aNP_610140.4 PBP2_LTTR_substrate 216..338 CDD:330233 25/134 (19%)
Periplasmic_Binding_Protein_Type_2 297..>391 CDD:328725 21/101 (21%)
Periplasmic_Binding_Protein_Type_2 <496..637 CDD:328725 25/160 (16%)
Grin2aNP_032196.2 PBP1_iGluR_NMDA_NR2 32..392 CDD:107373 38/227 (17%)
PBP2_iGluR_NMDA_Nr2 403..802 CDD:270436 91/515 (18%)
HisJ <458..>541 CDD:223904 20/106 (19%)
Lig_chan 556..828 CDD:278489 62/358 (17%)
NMDAR2_C 839..1464 CDD:287527
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846464
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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