DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir40a and Grik3

DIOPT Version :9

Sequence 1:NP_610140.4 Gene:Ir40a / 35449 FlyBaseID:FBgn0259683 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_001074566.1 Gene:Grik3 / 14807 MGIID:95816 Length:919 Species:Mus musculus


Alignment Length:773 Identity:149/773 - (19%)
Similarity:268/773 - (34%) Gaps:220/773 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ALGLLPYLLGLLNSTRLTFIGNDESD-TAIALTQIVRGLQQSSLAILALPSLALSDGVCQKERNV 69
            ||.|.||....:|.|....:..|... :||.....:..||.:..|     ...|.|||...:..:
Mouse   266 ALDLEPYRYSGVNLTGFRILNVDNPHVSAIVEKWAMERLQAAPRA-----ESGLLDGVMMTDAAL 325

  Fly    70 YLDDFLQRLHRSNYKSVVFSQTELFFQHIEENLQGANECISLILDEPNQLLNSLH-DRH----LG 129
            ..|    .:|   ..||.:.:.                        |...:|||. .||    .|
Mouse   326 LYD----AVH---IVSVCYQRA------------------------PQMTVNSLQCHRHKAWRFG 359

  Fly   130 HRLSLFIFYWGARWPPSSRVIRFREPLRVVVVTRPRKKAFRIYYNQARPC-SDSQLQLVNWYDGD 193
            .|...||  ..|:|          |.|           ..||.:|:.... :|..|.:::..:. 
Mouse   360 GRFMNFI--KEAQW----------EGL-----------TGRIVFNKTSGLRTDFDLDIISLKED- 400

  Fly   194 NLGLQRIPLLPTA--LSVYANFKGRTFRVPVFHSPPWFWVTYCNNSFEEDEEFNSLDSIEKRKVR 256
              ||:::.:...|  |::....|||        .|                  |..||:..|.:.
Mouse   401 --GLEKVGVWSPADGLNITEVAKGR--------GP------------------NVTDSLTNRSLI 437

  Fly   257 VTGGRDHRLLMLLSK----HMNFRF---------KYIEAPGRTQGSMRSEDGK----DSNDSFTG 304
            ||...:...:|....    :.|.||         :.....|.:......||||    |....:.|
Mouse   438 VTTVLEEPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNG 502

  Fly   305 GIGLLQSGQADFFLGDVGLSWERRKAIEFS--FFTLADSGAFATHAPRRLNEAL-AIMRPFKQDI 366
            .:..|...:||..:..:.::..|.|||:||  |.||..|..:  ..|...|.:: :.:.|...||
Mouse   503 MVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILY--RKPNGTNPSVFSFLNPLSPDI 565

  Fly   367 WPHLILTIIFSGPIFYGIIAL-PYIWRRRWANSDVEHLGELYIHMTYLKEITPRLLKLKPRTVLS 430
            |.:::|..:....:.:.|... ||    .|.::...:.|...:...:              |:|:
Mouse   566 WMYVLLAYLGVSCVLFVIARFSPY----EWYDAHPCNPGSEVVENNF--------------TLLN 612

  Fly   431 AHQMPHQLFQKCIWFTLRLFLKQSCNELHNGYRAKFLTIVYWIAATYVLADVYSAQLTSQFARPA 495
            :           .||.:...::|....:......:.:..::|. .|.::...|:|.|.:......
Mouse   613 S-----------FWFGMGSLMQQGSELMPKALSTRIIGGIWWF-FTLIIISSYTANLAAFLTVER 665

  Fly   496 REPPINTLQ------RLQAAMIHDGYRLYVEKESSSLEMLENGTELFRQLYALMRQQVINDPQGF 554
            .|.||::..      :::...:.||..:...|:|.        ...|.:::|.|..:    |.. 
Mouse   666 MESPIDSADDLAKQTKIEYGAVKDGATMTFFKKSK--------ISTFEKMWAFMSSK----PSA- 717

  Fly   555 FIDSVEAGIK--LIAEGGEDKAVLGGRETLFFNVQQYGSNNFQLSQKLYTRYSAVAVQIGCPFLG 617
            .:.:.|.||:  |.|    |.|:|....|:.: :.|...|..|:...:.::...:...:|.|:..
Mouse   718 LVKNNEEGIQRTLTA----DYALLMESTTIEY-ITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRD 777

  Fly   618 SLNNVLMQLFESGILDKMTAAEYAKQYQEVEATRIYKGS--VQAKNSEAYSRTESYDSTVISPLN 680
            .:...::||.|.   ||:          .:...:.::||  .:.:|.||            |.|.
Mouse   778 KITIAILQLQEE---DKL----------HIMKEKWWRGSGCPEEENKEA------------SALG 817

  Fly   681 LRMLQGAFIALGVGSLAAGVILLLEIVFIKL----------------DQARLWMLCSR 722
            ::.:.|.||.|..|.:.:.::.:.|.:: ||                |:.|..:.|.|
Mouse   818 IQKIGGIFIVLAAGLVLSVLVAVGEFIY-KLRKTAEREQRSFCSTVADEIRFSLTCQR 874

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir40aNP_610140.4 PBP2_LTTR_substrate 216..338 CDD:330233 29/140 (21%)
Periplasmic_Binding_Protein_Type_2 297..>391 CDD:328725 25/97 (26%)
Periplasmic_Binding_Protein_Type_2 <496..637 CDD:328725 30/148 (20%)
Grik3NP_001074566.1 PBP1_iGluR_Kainate_GluR5_7 34..417 CDD:107388 44/212 (21%)
PBP2_iGluR_Kainate_GluR7 433..801 CDD:270441 79/430 (18%)
Glutamate binding. /evidence=ECO:0000250 690..692 1/1 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846578
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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